Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Config file migration decisions #10

Open
gwaybio opened this issue Dec 14, 2020 · 0 comments
Open

Config file migration decisions #10

gwaybio opened this issue Dec 14, 2020 · 0 comments
Labels
enhancement New feature or request

Comments

@gwaybio
Copy link
Member

gwaybio commented Dec 14, 2020

Currently, we use a single config yaml file called config.yml.

We should consider splitting this file into three different config yaml files

File Contents Notes
pipeline.yml Modular block design of pipeline steps Depends on cytomining/profiling-recipe#11 and cytomining/profiling-recipe#12
experiment.yml batch and plate info, decision on whether or not to process This is the primary reason for the config split. For large experiments, the plate and batch specifications can get huge!
advanced.yml Anything outside of the block design and plate info e.g. #8
@gwaybio gwaybio added the enhancement New feature or request label Dec 14, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant