From 7926708d40d248ddaf991b1a61af971e26d1de75 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Wed, 30 Jul 2025 04:04:02 +0000
Subject: [PATCH 1/4] ci: update uv lock file

---
 pydatalab/uv.lock | 2000 ++++++++++++++++++++++++---------------------
 1 file changed, 1046 insertions(+), 954 deletions(-)

diff --git a/pydatalab/uv.lock b/pydatalab/uv.lock
index 80459c8fc..10ebb05d1 100644
--- a/pydatalab/uv.lock
+++ b/pydatalab/uv.lock
@@ -2,24 +2,22 @@ version = 1
 revision = 1
 requires-python = ">=3.10, <3.12"
 resolution-markers = [
-    "python_full_version < '3.11' and platform_python_implementation != 'PyPy'",
-    "python_full_version < '3.11' and platform_python_implementation == 'PyPy'",
-    "python_full_version >= '3.11' and platform_python_implementation != 'PyPy'",
-    "python_full_version >= '3.11' and platform_python_implementation == 'PyPy'",
+    "python_full_version >= '3.11'",
+    "python_full_version < '3.11'",
 ]
 
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 name = "aiohappyeyeballs"
-version = "2.4.3"
+version = "2.6.1"
 source = { registry = "https://pypi.org/simple" }
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 wheels = [
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+    { url = "https://files.pythonhosted.org/packages/0f/15/5bf3b99495fb160b63f95972b81750f18f7f4e02ad051373b669d17d44f2/aiohappyeyeballs-2.6.1-py3-none-any.whl", hash = "sha256:f349ba8f4b75cb25c99c5c2d84e997e485204d2902a9597802b0371f09331fb8", size = 15265 },
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 name = "aiohttp"
-version = "3.10.10"
+version = "3.12.15"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "aiohappyeyeballs" },
@@ -28,57 +26,63 @@ dependencies = [
     { name = "attrs" },
     { name = "frozenlist" },
     { name = "multidict" },
+    { name = "propcache" },
     { name = "yarl" },
 ]
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From 068c315e078501c53f899920bdcf17ab2b007d45 Mon Sep 17 00:00:00 2001
From: Matthew Evans <git@ml-evs.science>
Date: Thu, 31 Jul 2025 12:27:02 +0100
Subject: [PATCH 2/4] Update liccheck carve outs

- Remove liccheck exception for NewareNDA now that it has an spdx license
- Allow PSF-2.0 libraries
- Add exception for regex subdep
---
 pydatalab/pyproject.toml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pydatalab/pyproject.toml b/pydatalab/pyproject.toml
index 9cdf7e33a..3be9928d9 100644
--- a/pydatalab/pyproject.toml
+++ b/pydatalab/pyproject.toml
@@ -163,6 +163,7 @@ authorized_licenses = [
     "mit license",
     "python software foundation license",
     "python software foundation",
+    "PSF-2.0",
     "the unlicense",
     "zpl 2.1",
     "cmu license (MIT-CMU)",
@@ -174,6 +175,6 @@ unauthorized_licenses = [
 as_regex = true
 
 [tool.liccheck.authorized_packages]
-newarenda = ">=2025,<2026"
 datalab-org-galvani = ">=0.5"
 flask-cors = ">=5,<7"
+regex = ">=2025"

From e69b77f735f636b19547c01a9b030c9abaaf1c41 Mon Sep 17 00:00:00 2001
From: Matthew Evans <git@ml-evs.science>
Date: Thu, 31 Jul 2025 12:31:45 +0100
Subject: [PATCH 3/4] Bump uv itself to 0.8.4 and remove warning now that uv is
 relatively mature

---
 .docker/server_dockerfile | 6 ++++--
 .github/workflows/ci.yml  | 5 +++--
 INSTALL.md                | 2 --
 3 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/.docker/server_dockerfile b/.docker/server_dockerfile
index e67914757..0c6304809 100644
--- a/.docker/server_dockerfile
+++ b/.docker/server_dockerfile
@@ -1,4 +1,6 @@
-# syntax=docker/dockerfile:1
+ARG UV_VERSION="0.8.4"
+FROM ghcr.io/astral-sh/uv:${UV_VERSION} AS uv_image
+
 FROM python:3.10 AS api
 SHELL ["/bin/bash", "--login", "-c"]
 
@@ -12,7 +14,7 @@ RUN apt update && apt install -y gnupg curl tree mdbtools && apt clean
 WORKDIR /opt
 RUN wget https://fastdl.mongodb.org/tools/db/mongodb-database-tools-ubuntu2204-x86_64-100.9.0.deb && apt install ./mongodb-database-tools-*-100.9.0.deb
 
-COPY --from=ghcr.io/astral-sh/uv:0.6.4 /uv /usr/local/bin/uv
+COPY --from=uv_image /uv /usr/local/bin/uv
 ENV UV_LINK_MODE=copy \
     UV_COMPILE_BYTECODE=1 \
     UV_PYTHON_DOWNLOADS=never \
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 94b83e890..bd50d0630 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -9,6 +9,7 @@ on:
 
 env:
   FORCE_COLOR: true
+  UV_VERSION: "0.8.4"
 
 concurrency:
   group: ${{ github.head_ref || github.run_id }}
@@ -30,7 +31,7 @@ jobs:
       - name: Set up uv
         uses: astral-sh/setup-uv@v6
         with:
-          version: "0.6.4"
+          version: ${{ env.UV_VERSION }}
           enable-cache: true
 
       - name: Install dependencies
@@ -78,7 +79,7 @@ jobs:
       - name: Set up uv
         uses: astral-sh/setup-uv@v6
         with:
-          version: "0.6.4"
+          version: ${{ env.UV_VERSION }}
           working-directory: "./pydatalab"
           enable-cache: true
 
diff --git a/INSTALL.md b/INSTALL.md
index 16b567e50..d42bf396c 100644
--- a/INSTALL.md
+++ b/INSTALL.md
@@ -47,8 +47,6 @@ You will need Python 3.10 or higher to run *datalab*; we recommend using a tool
 ##### Installation with `uv` or `venv`
 
 We recommend using [`uv`](https://github.com/astral-sh/uv) (see the linked repository or https://docs.astral.sh/uv for installation instructions) for managing your *datalab* installation.
-This is still a fledgling tool that is supporting a wider subset of features each day; for now, we recommend using the version pinned in our `.docker/server_dockerfile`, otherwise you may need to regenerate the `uv.lock` file locally (please do not commit this file).
-
 
 You could also use the standard library `venv` module, but this will not allow you to install pinned dependencies as easily, and is significantly slower than `uv`.
 

From 12686f80c0360f565b48862da2b54bc196a33d15 Mon Sep 17 00:00:00 2001
From: Matthew Evans <git@ml-evs.science>
Date: Thu, 31 Jul 2025 12:32:22 +0100
Subject: [PATCH 4/4] Simplify CI: run all tests for draft PRs too

---
 .github/workflows/ci.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index bd50d0630..20ab1785e 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -1,7 +1,6 @@
 name: CI tests
 on:
   pull_request:
-    types: [ready_for_review, opened, synchronize, reopened]
 
   push:
     branches: