[2025/3/14] Move ys isoformdb to platform

Author: Yecats77

.htaccess

@@ -9,6 +9,11 @@
     import_rebase_db,
     import_utrdb,
 )
+from scripts.import_isoform import (
+    import_meta_data_to_database,
+    import_reference_annotation_to_database,
+)
+
 from datetime import timedelta
 import datetime
 
@@ -52,3 +57,9 @@ def log(log_str):
 
 # import_utrdb.add_data()
 # log(" [completed] scripts.import_utrdb\n")
+
+# import_meta_data_to_database.add_data()
+# log(" [completed] scripts.import_isoform.import_meta_data_to_database\n")
+
+# import_reference_annotation_to_database.add_data()
+# log(" [completed] scripts.import_isoform.import_reference_annotation_to_database\n")

00_test.ipynb

@@ -0,0 +1,3 @@
+from django.contrib import admin
+
+# Register your models here.

01_database_add_data.py

@@ -0,0 +1,6 @@
+from django.apps import AppConfig
+
+
+class RNADatasetsConfig(AppConfig):
+    default_auto_field = 'django.db.models.BigAutoField'
+    name = 'isoform_datasets'

isoform_datasets/__init__.py

@@ -0,0 +1,30 @@
+# Generated by Django 4.2.1 on 2025-03-05 12:25
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    initial = True
+
+    dependencies = [
+    ]
+
+    operations = [
+        migrations.CreateModel(
+            name='Datasets',
+            fields=[
+                ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+                ('name', models.CharField(max_length=255, unique=True)),
+                ('database', models.CharField(blank=True, max_length=255, null=True)),
+                ('data_type', models.CharField(blank=True, max_length=255, null=True)),
+                ('submission_date', models.DateField(auto_now_add=True)),
+                ('last_update_date', models.DateField(auto_now=True)),
+            ],
+            options={
+                'verbose_name': 'datasets',
+                'verbose_name_plural': 'datasets',
+                'db_table': 'datasets',
+            },
+        ),
+    ]

isoform_datasets/admin.py

@@ -0,0 +1,16 @@
+from django.db import models
+
+class Datasets(models.Model):
+    name = models.CharField(max_length=255, unique=True)
+    database = models.CharField(max_length=255, blank=True, null=True)
+    data_type = models.CharField(max_length=255, blank=True, null=True)
+    submission_date = models.DateField(auto_now_add=True)
+    last_update_date = models.DateField(auto_now=True)
+
+    class Meta:
+        db_table = 'datasets'
+        verbose_name = 'datasets'
+        verbose_name_plural = verbose_name
+
+    def __str__(self):
+        return self.name

isoform_datasets/apps.py

@@ -0,0 +1,8 @@
+from rest_framework import serializers
+from isoform_datasets.models import Datasets
+
+
+class DatasetsSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = Datasets
+        fields = '__all__'