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GLNexus CLI List/Manifest issue using -l #324

@lmajeres

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@lmajeres

Hi! I noticed a small problem when trying to run GLNexus CLI by passing a manifest.txt with my files.

The help description of glnexus_cli describes using the option to pass the manifest file like this:
--list, -l expect given files to contain lists of gVCF filenames, one per line

However, the -l option doesn't seem to work. If you don't include an input vcf in your command, it won't run and will just print the help statement. --list works as intended though.

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