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environment.yml
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environment.yml
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name: spectra
channels:
- pytorch
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_llvm
- _r-mutex=1.0.0=anacondar_1
- argcomplete=1.12.3=pyhd3eb1b0_0
- argon2-cffi=20.1.0=py37h27cfd23_1
- arpack=3.7.0=hc6cf775_2
- async_generator=1.10=py37h28b3542_0
- attrs=21.4.0=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- blas=1.0=mkl
- bleach=4.1.0=pyhd3eb1b0_0
- blosc=1.21.0=h8c45485_0
- bottleneck=1.3.2=py37heb32a55_1
- brotli=1.0.9=he6710b0_2
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2021.10.8=ha878542_0
- cairo=1.14.12=h8948797_3
- certifi=2021.10.8=py37h89c1867_1
- cffi=1.15.0=py37h7f8727e_0
- cpuonly=2.0=0
- curl=7.79.1=h2574ce0_1
- cycler=0.11.0=pyhd3eb1b0_0
- dbus=1.13.18=hb2f20db_0
- debugpy=1.5.1=py37h295c915_0
- decorator=5.1.0=pyhd3eb1b0_0
- defusedxml=0.7.1=pyhd3eb1b0_0
- ecos=2.0.10=py37hb1e94ed_0
- entrypoints=0.3=py37_0
- expat=2.4.1=h2531618_2
- ffmpeg=4.3=hf484d3e_0
- fontconfig=2.13.1=h6c09931_0
- fonttools=4.25.0=pyhd3eb1b0_0
- freetype=2.11.0=h70c0345_0
- fribidi=1.0.10=h7b6447c_0
- giflib=5.2.1=h7b6447c_0
- glib=2.63.1=h5a9c865_0
- glpk=4.65=h9202a9a_1004
- gmp=6.2.1=h58526e2_0
- gnutls=3.6.15=he1e5248_0
- graphite2=1.3.14=h23475e2_0
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- harfbuzz=1.8.8=hffaf4a1_0
- hdf5=1.10.4=hb1b8bf9_0
- icu=58.2=he6710b0_3
- igraph=0.9.6=ha184e22_0
- importlib-metadata=4.8.2=py37h06a4308_0
- importlib_metadata=4.8.2=hd3eb1b0_0
- intel-openmp=2021.4.0=h06a4308_3561
- ipykernel=6.4.1=py37h06a4308_1
- ipython=7.29.0=py37hb070fc8_0
- ipython_genutils=0.2.0=pyhd3eb1b0_1
- ipywidgets=7.6.5=pyhd3eb1b0_1
- jedi=0.18.0=py37h06a4308_1
- jinja2=3.0.2=pyhd3eb1b0_0
- joblib=1.1.0=pyhd3eb1b0_0
- jpeg=9d=h7f8727e_0
- jsonschema=3.2.0=pyhd3eb1b0_2
- jupyter=1.0.0=py37_7
- jupyter_client=7.1.0=pyhd3eb1b0_0
- jupyter_console=6.4.0=pyhd3eb1b0_0
- jupyter_core=4.9.1=py37h06a4308_0
- jupyterlab_pygments=0.1.2=py_0
- jupyterlab_widgets=1.0.0=pyhd3eb1b0_1
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.3.1=py37h2531618_0
- krb5=1.19.3=h3790be6_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.35.1=h7274673_9
- leidenalg=0.8.8=py37hcd2ae1e_1
- libblas=3.9.0=12_linux64_mkl
- libcblas=3.9.0=12_linux64_mkl
- libcurl=7.79.1=h2574ce0_1
- libedit=3.1.20210910=h7f8727e_0
- libev=4.33=h516909a_1
- libffi=3.2.1=hf484d3e_1007
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=11.2.0=h1d223b6_11
- libgfortran-ng=7.5.0=ha8ba4b0_17
- libgfortran4=7.5.0=ha8ba4b0_17
- libiconv=1.15=h63c8f33_5
- libidn2=2.3.2=h7f8727e_0
- liblapack=3.9.0=12_linux64_mkl
- libllvm11=11.1.0=h3826bc1_0
- libnghttp2=1.43.0=h812cca2_1
- libpng=1.6.37=hbc83047_0
- libsodium=1.0.18=h7b6447c_0
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-ng=11.2.0=he4da1e4_11
- libtasn1=4.16.0=h27cfd23_0
- libtiff=4.2.0=h85742a9_0
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.0.3=h7f8727e_2
- libuv=1.40.0=h7b6447c_0
- libwebp=1.2.0=h89dd481_0
- libwebp-base=1.2.0=h27cfd23_0
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.12=h03d6c58_0
- llvm-openmp=12.0.1=h4bd325d_1
- llvmlite=0.37.0=py37h295c915_1
- lz4-c=1.9.3=h295c915_1
- lzo=2.10=h7b6447c_2
- markupsafe=2.0.1=py37h27cfd23_0
- matplotlib=3.5.0=py37h06a4308_0
- matplotlib-base=3.5.0=py37h3ed280b_0
- matplotlib-inline=0.1.2=pyhd3eb1b0_2
- metis=5.1.0=h58526e2_1006
- mistune=0.8.4=py37h14c3975_1001
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py37h7f8727e_0
- mkl_fft=1.3.1=py37hd3c417c_0
- mkl_random=1.2.2=py37h51133e4_0
- mock=4.0.3=pyhd3eb1b0_0
- mpfr=4.1.0=h9202a9a_1
- munkres=1.0.7=py_1
- nbclient=0.5.3=pyhd3eb1b0_0
- nbconvert=6.3.0=py37h06a4308_0
- nbformat=5.1.3=pyhd3eb1b0_0
- ncurses=6.3=h7f8727e_2
- nest-asyncio=1.5.1=pyhd3eb1b0_0
- nettle=3.7.3=hbbd107a_1
- notebook=6.4.6=py37h06a4308_0
- numba=0.54.1=py37h51133e4_0
- numexpr=2.8.1=py37h6abb31d_0
- numpy=1.20.3=py37hf144106_0
- numpy-base=1.20.3=py37h74d4b33_0
- olefile=0.46=py37_0
- openh264=2.1.1=h4ff587b_0
- openssl=1.1.1l=h7f98852_0
- opt_einsum=3.3.0=pyhd3eb1b0_1
- osqp=0.6.2.post0=py37he8f5f7f_3
- packaging=21.3=pyhd3eb1b0_0
- pandas=1.3.5=py37h8c16a72_0
- pandocfilters=1.4.3=py37h06a4308_1
- pango=1.42.4=h049681c_0
- parso=0.8.3=pyhd3eb1b0_0
- patsy=0.5.2=py37h06a4308_0
- pcre=8.45=h295c915_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pillow=8.4.0=py37h5aabda8_0
- pixman=0.40.0=h7f8727e_1
- prometheus_client=0.12.0=pyhd3eb1b0_0
- prompt-toolkit=3.0.20=pyhd3eb1b0_0
- prompt_toolkit=3.0.20=hd3eb1b0_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pycparser=2.21=pyhd3eb1b0_0
- pygments=2.10.0=pyhd3eb1b0_0
- pyparsing=3.0.4=pyhd3eb1b0_0
- pyqt=5.9.2=py37h05f1152_2
- pyrsistent=0.18.0=py37heee7806_0
- pytables=3.6.1=py37h71ec239_0
- python=3.7.6=h0371630_2
- python-annoy=1.17.0=py37hcd2ae1e_3
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-igraph=0.9.9=py37h6c76e3a_0
- python_abi=3.7=2_cp37m
- pytorch=1.10.1=py3.7_cpu_0
- pytorch-mutex=1.0=cpu
- pytz=2021.3=pyhd3eb1b0_0
- pyzmq=22.3.0=py37h295c915_2
- qdldl-python=0.1.5=py37he8f5f7f_2
- qt=5.9.7=h5867ecd_1
- qtconsole=5.1.1=pyhd3eb1b0_0
- qtpy=1.10.0=pyhd3eb1b0_0
- scikit-learn=1.0.2=py37h51133e4_1
- scipy=1.7.3=py37hc147768_0
- scs=3.2.0=py37h8450f2d_0
- seaborn=0.11.2=pyhd3eb1b0_0
- send2trash=1.8.0=pyhd3eb1b0_1
- sip=4.19.8=py37hf484d3e_0
- six=1.16.0=pyhd3eb1b0_0
- sqlite=3.33.0=h62c20be_0
- statsmodels=0.12.2=py37h27cfd23_0
- suitesparse=5.10.1=h9e50725_1
- tbb=2021.5.0=hd09550d_0
- terminado=0.9.4=py37h06a4308_0
- testpath=0.5.0=pyhd3eb1b0_0
- texttable=1.6.4=pyhd8ed1ab_0
- threadpoolctl=2.2.0=pyh0d69192_0
- tk=8.6.11=h1ccaba5_0
- torchaudio=0.10.1=py37_cpu
- torchvision=0.11.2=py37_cpu
- tornado=6.1=py37h27cfd23_0
- traitlets=5.1.1=pyhd3eb1b0_0
- typing_extensions=3.10.0.2=pyh06a4308_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- webencodings=0.5.1=py37_1
- wheel=0.37.1=pyhd3eb1b0_0
- widgetsnbextension=3.5.1=py37_0
- xz=5.2.5=h7b6447c_0
- zeromq=4.3.4=h2531618_0
- zipp=3.7.0=pyhd3eb1b0_0
- zlib=1.2.11=h7f8727e_4
- zstd=1.4.9=haebb681_0
- pip:
- absl-py==1.0.0
- anndata==0.7.8
- appdirs==1.4.4
- astor==0.8.1
- astunparse==1.6.3
- biothings-client==0.2.6
- brewer2mpl==1.4.1
- cached-property==1.5.2
- cachetools==5.0.0
- charset-normalizer==2.0.10
- cython==0.29.28
- datacache==1.1.5
- fbpca==1.0
- flatbuffers==2.0
- gast==0.2.2
- geosketch==1.2
- google-auth==2.5.0
- google-auth-oauthlib==0.4.6
- google-pasta==0.2.0
- group-lasso==1.5.0
- grpcio==1.43.0
- gtfparse==1.2.1
- h5py==3.6.0
- harmonypy==0.0.5
- idna==3.3
- intervaltree==2.1.0
- jax==0.3.13
- jaxlib==0.3.10+cuda11.cudnn82
- jaxopt==0.4.2
- jsonpickle==2.1.0
- kern-smooth==1.1.1
- libclang==13.0.0
- markdown==3.3.6
- memoized-property==1.0.3
- mygene==3.2.2
- natsort==8.0.2
- networkx==2.6.3
- oauthlib==3.1.1
- pip==22.1.2
- progressbar33==2.4
- protobuf==3.19.4
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pyensembl==2.0.0
- pyglmnet==1.1
- pynndescent==0.5.6
- pyvis==0.1.9
- requests==2.27.1
- requests-oauthlib==1.3.0
- scanpy==1.8.2
- scikit-dsdp==0.0.1
- serializable==0.2.1
- setuptools==62.3.3
- simplejson==3.17.6
- sinfo==0.3.4
- sortedcontainers==2.4.0
- stdlib-list==0.8.0
- termcolor==1.1.0
- tinytimer==0.0.0
- tqdm==4.62.3
- typechecks==0.1.0
- umap-learn==0.5.2
- urllib3==1.26.8
- werkzeug==2.0.2
- wrapt==1.13.3
- xlrd==1.2.0
prefix: /home/kunesr/miniconda3/envs/spectra