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GTEX experiment in bulk has a performance issue when the user search for genes on that experiment page #239

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ke4 opened this issue Jan 10, 2025 · 0 comments
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ke4 commented Jan 10, 2025

The above description is copied from a related ticket where we replaced the accession of the old GTEX with the new one. That is a temporary fix where we hardcoded that specific accession.


The gene expression view showing properly, while the box and transcripts view are taking too long time to response for E-GTEX-8.

We have the 500 issue as shown in the screenshot I shared above, so the gene search result will disappear. It is actually a performance issue, if you try on local server url, it is working fine.
, e.g. on prod: http://wp-p1m2-98:8080/gxa/experiments/E-GTEX-8/Results?specific=true&geneQuery=%25[…]D&cutoff=%257B%2522value%2522%253A0.5%257D&unit=%2522TPM%2522.

we can do now quickly to 'fix' this is to block the box and transcript view for the new GTEX version too and then have a think on what to do next.


We need to find a way to properly fix this 500 error coming from our backend app. It is probably a timeout issue.

@ke4 ke4 added bug Something isn't working technical debt Technical debt labels Jan 10, 2025
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