Add atlas-web-bulk for the skeleton project for bulk

[ke4]

In this task I have to migrate our existing code for Bulk Expression Atlas to our new SpringBoot based project and fix all the broken code that might happen because of Java and Spring Framework version changes.

Steps:

• Copy the necessary source code to our new SpringBoot project
• Fix the dependency issues
• Fix the broken code that might be caused by various version changes of dependencies
• Need to check the correct use of annotations:
  • @Inject ----> @Autowired
  • @nAmed ----> @controller
• javax package ---> jakarta package, because of Java EE -> Jakarta EE
• Execute all the test of the app
• As we are using Tiles in our current app, it looks like we need an even bigger refactor, unfortunately.
  We have to change the view technology and drop JSP and Tiles and replace them with a current view technology, like: ThymeLeaf.
  • uk.ac.ebi.atlas.configuration.WebConfig
  • webapp/WEB-INF ~ 36 files (JSPs and XMLs)
  • webapp/resources/html ???
• Copy the relevant source for our docker env creation and execution
• Copy the shell scipts to be able to execute tests and debug the app
• check why HttpOnlyCookieConfigurator is never used according to IntelliJ.

Consider to remove the org.jetbrains:annotations library as a dependency if we are only using the https://github.com/NotNull annotation

At the end of this task we should be able to execute successfully all the tests based on this library.

[ke4]

Need to check later why HttpOnlyCookieConfigurator is never used according to IntelliJ.

[ke4]

Tiles framework is not supported anymore with the latest Spring Framework.
Spring dropped Tiles support from version 6.0: https://github.com/spring-projects/spring-framework/wiki/Spring-Framework-6.0-Release-Notes#web-applications

From documentation (release notes):
Several outdated Servlet-based integrations have been dropped: e.g. Apache Commons FileUpload (org.springframework.web.multipart.commons.CommonsMultipartResolver), and Apache Tiles as well as FreeMarker JSP support in the corresponding org.springframework.web.servlet.view subpackages. We recommend org.springframework.web.multipart.support.StandardServletMultipartResolver for multipart file uploads and regular FreeMarker template views if needed, and a general focus on REST-oriented web architectures.

As we are using Tiles in our current app, it looks like we need an even bigger refactor, unfortunately.
We have to change the view technology and drop JSP and Tiles and replace them with a current view technology, like: ThymeLeaf.

Effected code:

• uk.ac.ebi.atlas.configuration.WebConfig
• webapp/WEB-INF ~ 36 files (JSPs and XMLs)
• webapp/resources/html ???