From 7a2173ef7c3be4e2365a95e53b3aceae4bf9e7cc Mon Sep 17 00:00:00 2001
From: Anil Thanki <thanki.anil@gmail.com>
Date: Thu, 15 Feb 2024 14:38:23 +0000
Subject: [PATCH] Update scanpy-filter-genes.xml adds assert to test output

---
 tools/tertiary-analysis/scanpy/scanpy-filter-genes.xml | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/tools/tertiary-analysis/scanpy/scanpy-filter-genes.xml b/tools/tertiary-analysis/scanpy/scanpy-filter-genes.xml
index a32f9b01..659ae1a3 100644
--- a/tools/tertiary-analysis/scanpy/scanpy-filter-genes.xml
+++ b/tools/tertiary-analysis/scanpy/scanpy-filter-genes.xml
@@ -82,7 +82,11 @@ $force_recalc
         <param name="min" value="0"/>
         <param name="max" value="1e9"/>
       </repeat>
-      <output name="output_h5" file="filter_genes.h5" ftype="h5" compare="sim_size" delta_frac="0.1"/>
+      <output name="output_h5" ftype="h5">
+        <assert_contents>
+          <has_h5_keys keys="obs/n_genes_by_counts"/>
+        </assert_contents>
+      </output>
     </test>
   </tests>