From f9fbe751bc8e8b1ca631776a4ff47ff931df267e Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 13 Jul 2021 17:05:39 +0100 Subject: [PATCH 1/2] Try unpinning umap-learn (#103) * Try unpinning umap-learn * Add Py3.9 to the CI * Add explicit hdf5 dependency * Revert "Add explicit hdf5 dependency" This reverts commit 828159ec44067754642f22726a5500a32b119a35. * Add lihdf5 to the env * Fix dependency order * Fix binutils * Try older ubuntu * Revert "Try older ubuntu" This reverts commit e9c1f02318d0ae13a684b0666f007afc6e253141. * Revert "Fix binutils" This reverts commit e08af2857db6f31cec553d117acbd21e56e63873. * Revert "Add Py3.9 to the CI" This reverts commit 23041ad12ecf73faddbb97233231b2e9e88ffaab. --- .github/workflows/python-package.yml | 1 + setup.py | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 1193ee6b..ecc4bbc0 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -25,6 +25,7 @@ jobs: - name: Install dependencies run: | + sudo apt-get install libhdf5-dev pip install -U setuptools>=40.1 wheel 'cmake<3.20' pip install . diff --git a/setup.py b/setup.py index 84ed0b75..b9110cd5 100644 --- a/setup.py +++ b/setup.py @@ -47,7 +47,7 @@ 'loompy', 'MulticoreTSNE', 'Click<8', - 'umap-learn<0.4.0', + 'umap-learn', 'harmonypy>=0.0.5', 'bbknn>=1.5.0', 'mnnpy>=0.1.9.5', From e7ac33bddd702421b8565fbea9b37b4c025eac83 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 13 Jul 2021 17:07:51 +0100 Subject: [PATCH 2/2] Bump version --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index b9110cd5..26aa9db8 100644 --- a/setup.py +++ b/setup.py @@ -5,7 +5,7 @@ setup( name='scanpy-scripts', - version='1.0.0', + version='1.0.1', author='nh3', author_email='nh3@users.noreply.github.com', description='Scripts for using scanpy from the command line',