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# syntax=docker/dockerfile:1
FROM golang:latest
RUN apt-get install -y ca-certificates
RUN wget --no-check-certificate -q "https://dist.ipfs.io/go-ipfs/v0.11.0/go-ipfs_v0.11.0_linux-amd64.tar.gz" \
&& tar -xvf "go-ipfs_v0.11.0_linux-amd64.tar.gz" \
&& rm -f go-ipfs_v0.11.0_linux-amd64.tar.gz
WORKDIR go-ipfs
RUN make install \
&& ./install.sh
RUN git clone https://github.com/prasmussen/gdrive.git /workspace
WORKDIR /workspace/gdrive
RUN go env -w GO111MODULE=auto \
&& go get github.com/prasmussen/gdrive
FROM python:3.7
# ENV VIRTUAL_ENV=/opt/venv
# RUN python3 -m venv $VIRTUAL_ENV
# ENV PATH="$VIRTUAL_ENV/bin:$PATH"
ENV PYTHONDONTWRITEBYTECODE 1
ENV PYTHONUNBUFFERED 1
ENV PATH="/root/.pyenv/shims:/root/.pyenv/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/bin:$PATH"
ARG DEBIAN_FRONTEND=noninteractive
ARG DEBCONF_NOWARNINGS="yes"
EXPOSE 6817 6818 6819 6820 3306
## ebloc-workflow-engine -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
RUN apt-get update \
&& apt-get install -y --no-install-recommends --assume-yes apt-utils \
&& apt-get install -y --no-install-recommends --assume-yes \
build-essential \
libdbus-1-dev \
libdbus-glib-1-dev \
libgirepository1.0-dev \
libssl-dev \
members \
pv \
rsync \
pigz \
zlib1g-dev \
make \
default-mysql-server \
npm \
nodejs \
python3-venv \
# slurm-packages
gcc \
munge \
libmunge-dev \
libboost-all-dev \
libmunge2 \
default-mysql-client \
default-mysql-server \
software-properties-common \
default-libmysqlclient-dev \
mailutils \
unzip \
libmariadbd-dev \
mariadb-server \
supervisor \
nano \
less \
&& apt-get clean
RUN npm config set fund false \
&& npm config set update-notifier false \
&& npm install n -g \
&& n latest \
&& hash -r \
&& npm install -g npm@latest \
&& npm install -g ganache
RUN python3 -m venv /opt/venv
#: enable venv
ENV PATH="/opt/venv/bin:$PATH"
WORKDIR /workspace
RUN git clone https://github.com/ebloc/ebloc-workflow-engine.git
WORKDIR /workspace/ebloc-workflow-engine
#: `pip install -e .` takes few minutes
RUN git checkout dev >/dev/null 2>&1 \
&& git fetch --all --quiet >/dev/null 2>&1 \
&& git pull --all -r -v >/dev/null 2>&1 \
&& pip install --upgrade pip \
&& pip install -U pip wheel setuptools \
&& pip install -e . --use-deprecated=legacy-resolver \
&& ./broker/_utils/yaml.py >/dev/null 2>&1
COPY --from=0 /go /go
COPY --from=0 /usr/local/bin /usr/local/bin
COPY --from=0 /usr/local/go /usr/local/go
COPY --from=0 /workspace/gdrive /workspace/gdrive
ENV GOPATH=/go
ENV GOROOT=/usr/local/go
ENV PATH /go/bin:/usr/local/go/bin:$PATH
# Instal SLURM
# -=-=-=-=-=-=
# Add Tini
ENV TINI_VERSION v0.19.0
ADD https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini /tini
RUN chmod +x /tini
RUN git config --global advice.detachedHead false
WORKDIR /workspace
ARG JOBS=4
RUN git clone -b slurm-19-05-8-1 --single-branch --depth 1 https://github.com/SchedMD/slurm.git \
&& cd slurm \
&& ./configure --prefix=/usr --sysconfdir=/etc/slurm --enable-slurmrestd \
--with-mysql_config=/usr/bin --libdir=/usr/lib64 \
&& make \
&& make -j ${JOBS} install \
&& install -D -m644 etc/cgroup.conf.example /etc/slurm/cgroup.conf.example \
&& install -D -m644 etc/slurm.conf.example /etc/slurm/slurm.conf.example \
&& install -D -m600 etc/slurmdbd.conf.example /etc/slurm/slurmdbd.conf.example \
&& install -D -m644 contribs/slurm_completion_help/slurm_completion.sh /etc/profile.d/slurm_completion.sh \
&& cd .. \
&& rm -rf slurm \
&& slurmctld -V \
&& groupadd -r slurm \
&& useradd -r -g slurm slurm \
&& mkdir -p /etc/sysconfig/slurm \
/var/spool/slurmd \
/var/spool/slurmctld \
/var/log/slurm \
/var/run/slurm \
&& chown -R slurm:slurm /var/spool/slurmd \
/var/spool/slurmctld \
/var/log/slurm \
/var/run/slurm
RUN chown root:munge -R /etc/munge /etc/munge/munge.key /var/lib/munge # works but root is alright?
WORKDIR /var/log/slurm
WORKDIR /var/run/supervisor
COPY broker/_slurm/files/supervisord.conf /etc/
# Mark externally mounted volumes
VOLUME ["/var/lib/mysql", "/var/lib/slurmd", "/var/spool/slurm", "/var/log/slurm", "/run/munge"]
COPY --chown=slurm broker/_slurm/files/slurm/slurm.conf /etc/slurm/slurm.conf
COPY --chown=slurm broker/_slurm/files/slurm/gres.conf /etc/slurm/gres.conf
COPY --chown=slurm broker/_slurm/files/slurm/slurmdbd.conf /etc/slurm/slurmdbd.conf
RUN chmod 0600 /etc/slurm/slurmdbd.conf
## mongodb
RUN curl -fsSL https://www.mongodb.org/static/pgp/server-4.4.asc | apt-key add - \
&& echo "deb [ arch=amd64,arm64 ] https://repo.mongodb.org/apt/ubuntu focal/mongodb-org/4.4 multiverse" | \
tee /etc/apt/sources.list.d/mongodb-org-4.4.list \
&& apt-get update \
&& apt-get install -y mongodb-org \
&& mkdir -p /data/db \
&& chown -R mongodb. /var/log/mongodb \
&& chown -R mongodb. /var/lib/mongodb \
&& chown mongodb:mongodb /data/db
## Finally
WORKDIR /workspace/ebloc-workflow-engine/workflow-engine
RUN apt-get clean \
&& apt-get autoremove \
&& apt-get autoclean \
&& ipfs version \
&& ganache --version
COPY broker/_slurm/docker-entrypoint.sh /usr/local/bin/docker-entrypoint.sh
ENTRYPOINT ["/tini", "--", "/usr/local/bin/docker-entrypoint.sh"]
CMD ["/bin/bash"]