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taxize_poster.bib
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taxize_poster.bib
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@misc{_edild/restax_????,
title = {{restax-package}},
note = {https://github.com/EDiLD/restax},
}
@article{cuffney_ambiguous_2007,
title = {Ambiguous taxa: effects on the characterization and interpretation of invertebrate assemblages},
volume = {26},
issn = {0887-3593, 1937-{237X}},
shorttitle = {Ambiguous taxa},
url = {http://www.bioone.org/doi/abs/10.1899/0887-3593%282007%2926%5B286%3AATEOTC%5D2.0.CO%3B2},
doi = {10.1899/0887-3593(2007)26[286:ATEOTC]2.0.CO;2},
language = {en},
number = {2},
urldate = {2014-06-05},
journal = {Journal of the North American Benthological Society},
author = {Cuffney, T. F. and Bilger, M. D. and Haigler, A. M.},
month = jun,
year = {2007},
pages = {286--307},
file = {0887-3593%282007%2926%5B286%3Aateotc%5D2%2E0%2Eco%3B2.pdf:/home/edisz/Documents/Literature/storage/BSI5VEEU/0887-3593%282007%2926%5B286%3Aateotc%5D2%2E0%2Eco%3B2.pdf:application/pdf}
}
@article{boyle_taxonomic_2013,
title = {The taxonomic name resolution service: an online tool for automated standardization of plant names},
volume = {14},
copyright = {2013 Boyle et al.; licensee {BioMed} Central Ltd.},
issn = {1471-2105},
shorttitle = {The taxonomic name resolution service},
url = {http://www.biomedcentral.com/1471-2105/14/16/abstract},
doi = {10.1186/1471-2105-14-16},
abstract = {The digitization of biodiversity data is leading to the widespread application of taxon names that are superfluous, ambiguous or incorrect, resulting in mismatched records and inflated species numbers. The ultimate consequences of misspelled names and bad taxonomy are erroneous scientific conclusions and faulty policy decisions. The lack of tools for correcting this ‘names problem’ has become a fundamental obstacle to integrating disparate data sources and advancing the progress of biodiversity science.
{PMID:} 23324024},
language = {en},
number = {1},
urldate = {2014-01-10},
journal = {{BMC} Bioinformatics},
author = {Boyle, Brad and Hopkins, Nicole and Lu, Zhenyuan and Garay, Juan Antonio Raygoza and Mozzherin, Dmitry and Rees, Tony and Matasci, Naim and Narro, Martha L. and Piel, William H. and Mckay, Sheldon J. and Lowry, Sonya and Freeland, Chris and Peet, Robert K. and Enquist, Brian J.},
month = jan,
year = {2013},
pmid = {23324024},
keywords = {biodiversity informatics, Database integration, Plants, taxonomy},
pages = {16},
file = {!1471-2105-14-16.pdf:/home/edisz/Documents/Literature/storage/W8D3IXRN/!1471-2105-14-16.pdf:application/pdf;1471-2105-14-16.pdf:/home/edisz/Documents/Literature/storage/RJBRUNP2/1471-2105-14-16.pdf:application/pdf}
}
@article{guenard_using_2011,
title = {Using phylogenetic information to predict species tolerances to toxic chemicals},
volume = {21},
url = {http://www.esajournals.org/doi/abs/10.1890/10-2242.1},
number = {8},
urldate = {2013-10-29},
journal = {Ecological Applications},
author = {Guénard, Guillaume and Ohe, Peter Carsten von der and de Zwart, Dick and Legendre, Pierre and Lek, Sovan},
year = {2011},
pages = {3178–3190},
file = {8493_Using phylogenetic information to predict species tolerances.pdf:/home/edisz/Documents/Literature/storage/C4QSGXQI/8493_Using phylogenetic information to predict species tolerances.pdf:application/pdf;Ecological Archives A021-142-A1:/home/edisz/Documents/Literature/storage/7S2P2GCM/appendix-A.html:text/html}
}
@article{chamberlain_taxize:_2013,
title = {taxize: taxonomic search and retrieval in R [v2; ref status: indexed, http://f1000r.es/24v]},
volume = {2},
issn = {2046-1402},
shorttitle = {taxize},
url = {http://f1000research.com/articles/2-191/v2},
doi = {10.12688/f1000research.2-191.v2},
abstract = {All species are hierarchically related to one another, and we use taxonomic names to label the nodes in this hierarchy. Taxonomic data is becoming increasingly available on the web, but scientists need a way to access it in a programmatic fashion that’s easy and reproducible. We have developed taxize, an open-source software package (freely available from http://cran.r-project.org/web/packages/taxize/index.html) for the R language. taxize provides simple, programmatic access to taxonomic data for 13 data sources around the web. We discuss the need for a taxonomic toolbelt in R, and outline a suite of use cases for which taxize is ideally suited (including a full workflow as an appendix). The taxize package facilitates open and reproducible science by allowing taxonomic data collection to be done in the open-source R platform.},
number = {191},
urldate = {2013-09-19},
journal = {{F1000Research}},
author = {Chamberlain, Scott A. and Szöcs, Eduard},
month = sep,
year = {2013},
file = {10.12688_f1000research.2-191.v1_20130919.pdf:/home/edisz/Documents/Literature/storage/QQIRE448/10.12688_f1000research.2-191.v1_20130919.pdf:application/pdf;Chamberlain_2013_F1000_v2.pdf:/home/edisz/Documents/Literature/storage/2AMXZBFV/Chamberlain_2013_F1000_v2.pdf:application/pdf}
}