data-sources.json

[
  {
    "name": "covid19",
    "id_cfg": {
      "patient": {
        "id": "hash_patient_id",
        "position": 1,
        "start": "hospital_admission_timestamp",
        "end": "death_timestamp",
        "table": "episodes"
      },
      "icustay": {
        "id": "episode_id",
        "position": 2,
        "start": "admission_timestamp",
        "end": "discharge_timestamp",
        "table": "episodes"
      }
    },
    "tables": {
      "admissions": {
        "defaults": {
          "index_var": "admission_timestamp",
          "time_vars": ["admission_timestamp", "discharge_timestamp", "death_timestamp"]
        }
      },
      "episodes": {
        "defaults": {
          "index_var": "admission_timestamp",
          "time_vars": ["admission_timestamp", "discharge_timestamp", "hospital_admission_timestamp",
          "hospital_discharge_timestamp", "death_timestamp"]
        }
      },
      "intubations": {
        "defaults": {
          "index_var": "start_intubation",
          "time_vars": ["start_intubation", "end_intubation"],
          "val_var": "successful_extubation"
        }
      },
      "single_timestamp": {
        "defaults": {
          "index_var": "effective_timestamp",
          "time_vars": "effective_timestamp",
          "val_var": "numerical_value"
        },
        "partitioning": {
          "col": "pacmed_subname",
          "breaks": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]
        }
      },
      "range_measurements": {
        "defaults": {
          "index_var": "start_timestamp",
          "time_vars": ["start_timestamp", "end_timestamp"],
          "val_var": "numerical_value"
        }
      },
      "medications": {
        "defaults": {
          "index_var": "start_timestamp",
          "val_var": "total_dose",
          "time_vars": ["start_timestamp", "end_timestamp"]
        }
      },
      "parameters": {
        "defaults": {
          "val_var": "pacmed_subname"
        }
      },
      "outcomes": {
        "defaults": {
          "val_var": "mortality"
        }
      },
      "comorbidities": {
        "defaults": {
          "val_var": "diabetes"
        }
      },
      "diagnoses": {
        "defaults": {
          "index_var": "effective_timestamp",
          "time_vars": "effective_timestamp",
          "val_var": "icd10"
        }
      }
    }
  }
]