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1 parent dc770a0 commit 237a9b5Copy full SHA for 237a9b5
src/main/scala/com/fulcrumgenomics/umi/CorrectUmis.scala
@@ -166,7 +166,7 @@ class CorrectUmis
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override def execute(): Unit = {
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// Construct the full set of UMI sequences to match again
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val (umiSequences, umiLength) = {
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- val set = mutable.HashSet[String](umis:_*)
+ val set = mutable.HashSet[String](umis.map(_.toUpperCase):_*)
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umiFiles.foreach(Io.readLines(_).map(_.trim.toUpperCase).filter(_.nonEmpty).foreach(set.add))
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validate(set.nonEmpty, s"At least one UMI sequence must be provided; none found in files ${umiFiles.mkString(", ")}")
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