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I had to add --no-PG to my ubam generation code to avoid name collisions.
to reproduce create a ubam with samtools cat and samtool collate.
then use samtools collate to product the aligned bam.
The text was updated successfully, but these errors were encountered:
I had to add --no-PG to my ubam generation code to avoid name collisions.
to reproduce create a ubam with samtools cat and samtool collate.
then use samtools collate to product the aligned bam.
The text was updated successfully, but these errors were encountered: