Output FASTQ with barcodes ?

[drayac]

Hi everyone,

Thanks a lot for your great tool ! There is a feature that would potentially be useful (is not existing already, my bad if it is), is to be able to demultiplex FASTQ files, while keeping sample barcode / UMIs in the output FASTQs.

I found a solution by cutting off the 14 first base pairs to generate a third FASTQ that I used as an index; but this is suboptimal since it adds a lengthy pre-processing step before demultiplexing , that I have to perform on a pretty big file.

Otherwise, great experience with your tool, bravo !

Best,