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chore: update the release process to leverage GitHub Actions
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‎.github/workflows/publish.yml

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name: publish
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on:
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push:
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tags: '\d+.\d+.\d+'
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env:
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POETRY_VERSION: 1.6
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jobs:
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on-main-branch-check:
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runs-on: ubuntu-latest
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outputs:
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on_main: ${{ steps.contains_tag.outputs.retval }}
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- uses: rickstaa/action-contains-tag@v1
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id: contains_tag
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with:
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reference: "main"
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tag: "${{ github.ref_name }}"
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tests:
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name: tests
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needs: on-main-branch-check
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if: ${{ needs.on-main-branch-check.outputs.on_main == 'true' }}
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uses: "./.github/workflows/tests.yml"
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build-wheels:
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name: build wheels
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needs: tests
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uses: "./.github/workflows/wheels.yml"
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build-sdist:
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name: build source distribution
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needs: tests
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0
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submodules: true
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- uses: actions/setup-python@v5
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with:
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python-version: 3.12
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- name: Install poetry
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run: |
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python -m pip install --upgrade pip
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python -m pip install poetry==${{env.POETRY_VERSION}}
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- name: Configure poetry
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shell: bash
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run: poetry config virtualenvs.in-project true
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- name: Install dependencies
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run: poetry install --no-interaction --no-root --without=dev
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- name: Install project
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run: poetry install --no-interaction --without=dev
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- name: Build package
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run: poetry build --format=sdist
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- uses: actions/upload-artifact@v4
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with:
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name: pybedlite-sdist
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path: dist/*.tar.gz
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publish-to-pypi:
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runs-on: ubuntu-latest
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needs: [build-wheels, build-sdist]
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environment: pypi
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permissions:
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id-token: write
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steps:
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- uses: actions/download-artifact@v4
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with:
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path: packages
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pattern: 'pybedlite-*'
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merge-multiple: true
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- uses: pypa/gh-action-pypi-publish@release/v1
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with:
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packages-dir: packages/
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skip-existing: true
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verbose: true
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make-changelog:
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runs-on: ubuntu-latest
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needs: publish-to-pypi
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outputs:
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release_body: ${{ steps.git-cliff.outputs.content }}
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steps:
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- name: Checkout the Repository at the Tagged Commit
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uses: actions/checkout@v4
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with:
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fetch-depth: 0
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ref: ${{ github.ref_name }}
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- name: Generate a Changelog
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uses: orhun/git-cliff-action@v3
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id: git-cliff
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with:
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config: pyproject.toml
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args: --latest --verbose
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env:
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GITHUB_REPO: ${{ github.repository }}
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make-github-release:
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runs-on: ubuntu-latest
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environment: github
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permissions:
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contents: write
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pull-requests: read
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needs: make-changelog
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steps:
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- name: Create Draft Release
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id: create_release
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uses: softprops/action-gh-release@v2
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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with:
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name: ${{ github.ref_name }}
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body: |
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${{ needs.draft-changelog.outputs.release_body }}
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draft: false
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prerelease: false

‎.github/workflows/pythonpackage.yml

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‎.github/workflows/tests.yml

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name: tests
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on:
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push:
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branches:
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- "**"
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tags:
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- "!**"
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workflow_call:
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env:
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POETRY_VERSION: 1.6
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jobs:
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unit-tests:
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runs-on: ubuntu-latest
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environment: github-action-ci
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strategy:
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matrix:
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PYTHON_VERSION: ["3.8", "3.9", "3.10", "3.11"]
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steps:
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- uses: actions/checkout@v4
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with:
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submodules: "true"
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- name: Set up Python ${{ matrix.PYTHON_VERSION }}
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uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.PYTHON_VERSION }}
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- name: Get full Python version
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id: full-python-version
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shell: bash
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run: echo "version=$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))")" >> $GITHUB_OUTPUT
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- name: Install poetry
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run: |
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python -m pip install --upgrade pip
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python -m pip install poetry==${{env.POETRY_VERSION}}
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- name: Configure poetry
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shell: bash
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run: poetry config virtualenvs.in-project true
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- name: Set up cache
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uses: actions/cache@v4
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id: cache
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with:
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path: .venv
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key: venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('**/poetry.lock') }}
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- name: Ensure cache is healthy
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if: steps.cache.outputs.cache-hit == 'true'
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shell: bash
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run: poetry run pip --version >/dev/null 2>&1 || rm -rf .venv
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- name: Test the lock file is up to date
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run: python -m poetry check --lock
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- name: Install dependencies and package
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shell: bash
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run: |
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poetry install --only dev
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poetry build
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poetry install --extras docs
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- name: Run pytest
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shell: bash
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run: |
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poetry run python -m pytest --cov=pybedlite --cov-report=xml --cov-branch
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- name: Style checking
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shell: bash
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run: |
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poetry run black --line-length 99 --check pybedlite
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- name: Import sorting
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shell: bash
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run: |
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poetry run isort --force-single-line-imports --profile black --check pybedlite
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- name: Run lint
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shell: bash
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run: |
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poetry run flake8 --config=ci/flake8.cfg pybedlite
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- name: Run mypy
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shell: bash
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run: |
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poetry run mypy -p pybedlite --config=ci/mypy.ini
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- name: Run docs
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shell: bash
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run: |
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set -euo pipefail
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pushd docs
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poetry run make html
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popd
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- name: Upload code coverage
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uses: codecov/[email protected]
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with:
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token: ${{ secrets.CODECOV_TOKEN }}
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