About NSD dataset's pycortex db subjt file

[geoffreyfan]

Has anyone successfully created pycortex db files using the NSD dataset? I didn't achieve satisfactory results with my conversion. If anyone can share pycortex db files related to the NSD dataset, I would greatly appreciate it!

[geoffreyfan]

cortex.freesurfer.import_subj('NSD_subj01', cx_subject='NSD_subj01',freesurfer_subject_dir='/home/geoffreyfan/brain_Visualize/NSD_freesurfer/',whitematter_surf='smoothwm')
cortex.freesurfer.import_flat('NSD_subj01', 'full',hemis=['lh','rh'],cx_subject='NSD_subj01',flat_type='freesurfer',auto_overwrite=True,freesurfer_subject_dir='/home/geoffreyfan/brain_Visualize/NSD_freesurfer/',clean=True)
cortex.align.automatic('NSD_subj01','func1pt8_to_anat0pt8_autoFSbbr',reference='/home/geoffreyfan/brain_Visualize/NSD_freesurfer/NSD_subj01/transforms/func1pt8-to-anat0pt8.nii.gz')

[geoffreyfan]

[aluo-x]

Do you still need help with this?

[gongzix]

Could you give me a hand? I have the same question for the voxel weights' visualization on the NSD dataset. Thank you very much!

[mvdoc]

See also this issue #488

The surfaces shared with the NSD dataset may not conform to the standard freesurfer format, and so they require fixes prior to visualizing them in pycortex. I would suggest contacting the NSD authors if that's the issue.

[gongzix]

I am truly grateful for your timely help! I've drawn the image correctly. Thanks again.

[arnoliudaxia]

I am truly grateful for your timely help! I've drawn the image correctly. Thanks again.

Can you share how you did pls?

[xqoby]

I have the same problem, can you share your code？

[marklescroart]

My lab has good NSD surfaces, we are aiming to share them early in the new year!MLOn Dec 24, 2024, at 4:52 AM, xqoby ***@***.***> wrote: I have the same problem, can you share your code？ —Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>