update output variable (#22)

bshifaw · web-flow · commit 41184232854f · 2019-04-25T10:33:37.000-04:00
diff --git a/mutect2_pon.wdl b/mutect2_pon.wdl
@@ -98,9 +98,9 @@ workflow Mutect2_Panel {
 
     output {
         File pon = MergeVCFs.merged_vcf
-        File pon_idx = MergeVCFs.merged_vcf_index
+        File pon_idx = MergeVCFs.merged_vcf_idx
         Array[File] normal_calls = Mutect2.filtered_vcf
-        Array[File] normal_calls_idx = Mutect2.filtered_vcf_index
+        Array[File] normal_calls_idx = Mutect2.filtered_vcf_idx
     }
 }
 

Original file line number	Diff line number	Diff line change
`@@ -98,9 +98,9 @@ workflow Mutect2_Panel {`
`98`	`98`
`99`	`99`	`output {`
`100`	`100`	`File pon = MergeVCFs.merged_vcf`
`101`		`- File pon_idx = MergeVCFs.merged_vcf_index`
	`101`	`+ File pon_idx = MergeVCFs.merged_vcf_idx`
`102`	`102`	`Array[File] normal_calls = Mutect2.filtered_vcf`
`103`		`- Array[File] normal_calls_idx = Mutect2.filtered_vcf_index`
	`103`	`+ Array[File] normal_calls_idx = Mutect2.filtered_vcf_idx`
`104`	`104`	`}`
`105`	`105`	`}`
`106`	`106`