Core Project Schema Extensions

At the heart of each GLUE project is a relational database with an extensible schema.

Parvovirus-GLUE extends GLUE's core schema with additional tables and data fields. These **schema extensions are defined in this project build file.

Sequence table extensions

The sequence table of GLUE's core schema was extended to include the following additional fields:

Parameter	Type	Definition
full_name	VARCHAR	Full name of the virus this sequence is derived from
name	VARCHAR	Abbreviated name of the virus this sequence is derived from
gb_create_date	GenBank	GenBank creation date of the sequence
gb_update_date	VARCHAR	Date of most recent GenBank update
subfamily	VARCHAR	Taxonomy - virus subfamily
genus	VARCHAR	Taxonomy - virus genus
clade	VARCHAR	Taxonomy - virus clade
length	INTEGER	Length of the sequence
pubmed_id	INTEGER	PubMed ID of manuscript associated with GenBank entry

Isolate table

A custom table was defined to capture isolate-associated information, as follows:

Parameter	Type	Definition
isolate	VARCHAR	Name of the isolate
host_sci_name	VARCHAR	Scientific name of the isolation species
country	VARCHAR	Country where virus was isolated
country_iso	VARCHAR	ISO code of country where virus was isolated
place_sampled	VARCHAR	Location of sampling (state, region, or city)
collection_year	INTEGER	Year virus was isolated
collection_month	VARCHAR	Month virus was isolated
collection_month_day	INTEGER	Day of month virus was isolated