Suppress output from Jackhmmer seq limit check #470
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Prevent Jackhmmer printing many copies of its usage to the terminal when checking if it has been patched.
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Augustin-Zidek
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Jul 14, 2025
…is supported Inspired by #470, thanks @owainkenwayucl. PiperOrigin-RevId: 782928877 Change-Id: I8cb09f9bd75f174f78340ad72f80b805eb873be8
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Thanks, good catch. I fixed this a bit differently in 0422023. |
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The current implementation of
jackhmmer_seq_limit_supportedprints out the output of the command (and thus many copies of the full usage information ofjackhmmer) to the terminal. This commit setscapture_outputtoTrue, meaning it'll be stored in the return dictionary ofsubprocess.run()rather than printed to the terminal.