From ece5ad28283f0170ef4c0014e81c7706d45890e6 Mon Sep 17 00:00:00 2001
From: Emilio Palumbo <emiliopalumbo@gmail.com>
Date: Thu, 28 Jul 2022 18:38:10 +0200
Subject: [PATCH] Remove unneeded stuff from shell.prefix in master.smk

---
 master.smk | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/master.smk b/master.smk
index 859c875..ed1da92 100644
--- a/master.smk
+++ b/master.smk
@@ -14,7 +14,7 @@ onerror:
 	print("LyRic workflow finished with errors, see log file.")
 
 #prefix all shell scripts with the following commands:
-shell.prefix('source ~/.bashrc; set +eu; conda deactivate;  set -euo pipefail; export PATH="$PWD/LyRic/utils/:$PATH";')
+shell.prefix('set -euo pipefail; export PATH="$PWD/LyRic/utils/:$PATH";')
 #(it seems DRMAA does not source ~/.bashrc by itself)
 include: "functions.py"