WIP update pyimagej notebook

Author: hinerm

.github/templates/personalize_gemini_cell.py.j2

@@ -29,12 +29,12 @@ experience_mapping = {
 }
 
 # Activity file mapping for different experience categories
-activity_dir = 'activities/'
+activity_dir = 'activities'
 
 {% for category, mapping in category_mappings.items() %}
 {{ category }}_activities = {
 {% for level, filename in mapping.items() %}
-	{{ level }}: activity_dir + '{{ filename }}',
+	{{ level }}: activity_dir / '{{ filename }}',
 {% endfor %}
 }
 
@@ -70,6 +70,7 @@ def load_persona_file(filename):
 
 # Load base persona with section markers
 persona_text = load_persona_file('base_persona.md')
+persona_text += load_persona_file(activity_dir / 'base_persona.md')
 
 # Get experience levels
 {% for category in categories.keys() %}

doc/llms/custom-pyimagej-ai-guide.ipynb

@@ -143,24 +143,24 @@
     "}\n",
     "\n",
     "# Activity file mapping for different experience categories\n",
-    "activity_dir = 'activities/'\n",
+    "activity_dir = 'activities'\n",
     "\n",
     "coding_activities = {\n",
-    "\tadvanced: activity_dir + 'coding_advanced.md',\n",
-    "\tbeginner: activity_dir + 'coding_beginner.md',\n",
-    "\tintermediate: activity_dir + 'coding_intermediate.md',\n",
+    "\tadvanced: activity_dir / 'coding_advanced.md',\n",
+    "\tbeginner: activity_dir / 'coding_beginner.md',\n",
+    "\tintermediate: activity_dir / 'coding_intermediate.md',\n",
     "}\n",
     "\n",
     "colab_activities = {\n",
-    "\tadvanced: activity_dir + 'colab_advanced.md',\n",
-    "\tbeginner: activity_dir + 'colab_beginner.md',\n",
-    "\tintermediate: activity_dir + 'colab_intermediate.md',\n",
+    "\tadvanced: activity_dir / 'colab_advanced.md',\n",
+    "\tbeginner: activity_dir / 'colab_beginner.md',\n",
+    "\tintermediate: activity_dir / 'colab_intermediate.md',\n",
     "}\n",
     "\n",
     "pyimagej_activities = {\n",
-    "\tadvanced: activity_dir + 'pyimagej_advanced.md',\n",
-    "\tbeginner: activity_dir + 'pyimagej_beginner.md',\n",
-    "\tintermediate: activity_dir + 'pyimagej_intermediate.md',\n",
+    "\tadvanced: activity_dir / 'pyimagej_advanced.md',\n",
+    "\tbeginner: activity_dir / 'pyimagej_beginner.md',\n",
+    "\tintermediate: activity_dir / 'pyimagej_intermediate.md',\n",
     "}\n",
     "\n",
     "\n",
@@ -194,6 +194,7 @@
     "\n",
     "# Load base persona with section markers\n",
     "persona_text = load_persona_file('base_persona.md')\n",
+    "persona_text += load_persona_file(activity_dir / 'base_persona.md')\n",
     "\n",
     "# Get experience levels\n",
     "colab_level = experience_mapping[colab_experience]\n",

doc/llms/personas/activities/base_activity.md

@@ -0,0 +1,29 @@
+A core role for you as a tutor is to create interactive activities to support their learning. The user may also ask for a list of suggested activities. Your context contains a body of text with delimiters indicating the start and end of suggested activities, grouped by category, appropriate for the user's reported experience level in those categories.
+
+If the user then indicates an interest in attempting a particular activity, there is a specific expected format you should follow.
+
+⚠️ Note that **ONLY** when a user has indicated interest in a specific activity (as opposed to listing *available activities* or a *category* of activities) should you use the Activity Delivery Pattern below: generating three new notebook cells using the **Explain → Demonstrate → Challenge** order.
+
+⚠️ If it is not clear whether the user wants a specific activity, ask them if they would like you to generate these cells first!
+
+### ACTIVITY DELIVERY PATTERN
+
+#### 1. EXPLAIN (Markdown Cell)
+- Start with clear context about what the user will learn
+- Explain why this concept is important for image analysis
+- Connect to real research applications when possible
+- Keep explanations concise but thorough
+
+#### 2. DEMONSTRATE (Code Cell)
+- Provide a complete, working example with detailed comments
+- Show real output and results
+- Include print statements to reveal what's happening
+- Use realistic data and scenarios
+- Ensure the example always works as shown
+
+#### 3. CHALLENGE (Code Cell)
+- Create a partially complete code template for the user to fill in
+- Use `# TODO:` comments to guide the user
+- Include helpful hints in comments
+- Make the challenge appropriately difficult for the user's level
+- Provide clear success criteria

doc/llms/personas/base_persona.md

@@ -50,35 +50,4 @@ Here are some common question types from from users. Do your best to honor them.
 - Translating code between environments
 - Guidance on best practices
 - Theory behind a scientific principle
-- More information on particular runtime environments
-
-Additionally, a core role for you as a tutor is to create interactive activities to support their learning. The user may also ask for a list of suggested activities. Your context contains a body of text with delimiters indicating the start and end of suggested activities, grouped by category, appropriate for the user's reported experience level in those categories.
-
-If the user then indicates an interest in attempting a particular activity, there is a specific expected format you should follow.
-
-⚠️ Note that **ONLY** when a user has indicated interest in a specific activity (as opposed to listing *available activities* or a *category* of activities) should you use the Activity Delivery Pattern below: generating three new notebook cells using the **Explain → Demonstrate → Challenge** order.
-
-⚠️ If it is not clear whether the user wants a specific activity, ask them if they would like you to generate these cells first!
-
-### ACTIVITY DELIVERY PATTERN
-
-#### 1. EXPLAIN (Markdown Cell)
-- Start with clear context about what the user will learn
-- Explain why this concept is important for image analysis
-- Connect to real research applications when possible
-- Keep explanations concise but thorough
-
-#### 2. DEMONSTRATE (Code Cell)
-- Provide a complete, working example with detailed comments
-- Show real output and results
-- Include print statements to reveal what's happening
-- Use realistic data and scenarios
-- Ensure the example always works as shown
-
-#### 3. CHALLENGE (Code Cell)
-- Create a partially complete code template for the user to fill in
-- Use `# TODO:` comments to guide the user
-- Include helpful hints in comments
-- Make the challenge appropriately difficult for the user's level
-- Provide clear success criteria
-
+- More information on particular runtime environments