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NEWS
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Changes in version 1.10.2
-------------------------
* Welcome two important contributions by Sara Elmeligy! Sara implemented the uniqueness and dispensability terms
* `reducedSimMatrix()` outputs now the uniqueness and dispensability terms
* The column termDispensability replaces the current parentSimScore. They're equivalent
* `reducedSimMatrix()` now defaults to using the "uniqueness" if no vector of scores are provided
* Some minor fixes
Changes in version 1.10.1
-------------------------
* Add citation to microPublication Biology
Changes in version 1.8.1
-------------------------
* New features in scatterPlot():
- dimensionality reduction with UMAP
- plot only parents
* Fix picking the right point size in scatterPlot()
* Improve vignette
Changes in version 1.7.1
-------------------------
* Deprecate org.Pf.plasmo.db
Changes in version 1.5.4
-------------------------
* `scatterPlot()` doesn't warn anymore that we're using a deprecated parm to remove the guide
Changes in version 1.5.1
-------------------------
* `calculateSimMatrix()` now allows using arbitrary keys from Orgdb packages. Credit: illumination-k. Thanks!
Changes in version 1.3.1
-------------------------
* Bug fix for obsolete GO terms
Changes in version 1.2.1
-------------------------
* allow alternative keytypes in custom OrgDB objects
Changes in version 1.1.3
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* Warn user when no scores are provided and thus falling back to term's size as the score to rank terms
Changes in version 1.1.2
-------------------------
* Fix bug that would break `reduceSimMatrix()` when no scores were provided
Changes in version 0.99.1
-------------------------
* First release to Bioconductor