what does "killed" mean here in the circle-map realign output (new to coding) #109
Description
Hello, I am trying to run circle-map on my WGS data. Below is the command I ran; it seems to work, but ends with "killed" output. Could someone please help me understand this error and how to solve it? Thank you
(circlemap_env) X@ICBM:~/X/result/Bam/S3$ Circle-Map Realign
-i circular_read_candidates.sorted.bam
-qbam S3.qname.bam
-sbam S3.coord.bam
-fasta /X/result/03.Mapping/Reference/genome.fa
-o S3_circularDNA.bed
-t 4
2025-06-12 15:29:36: Realigning reads using Circle-Map
2025-06-12 15:29:36: Clustering structural variant reads
2025-06-12 15:30:30: Splitting clusters to to processors
400it [3:03:23, 27.51s/it]██████████████████████████████████████████████████████████████████████████████████████████████████████████| 400/400 [3:03:23<00:00, 19.62s/it]
100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 400/400 [3:03:23<00:00, 27.51s/it]
2025-06-12 18:33:55: Writting final output to disk
2025-06-12 18:33:55: Finished!
2025-06-12 18:33:55: Circle-Map Realign finished indentifying circles in 184.31840186913809
2025-06-12 18:33:55: Circle-Map has identified 2955 circles
Computing the coverage of the identified eccDNA
Merging intervals for coverage computation
Killed