diff --git a/CTEHR-Training.md b/CTEHR-Training.md index 6878105..838ee63 100644 --- a/CTEHR-Training.md +++ b/CTEHR-Training.md @@ -93,12 +93,12 @@ Edit `candice_list`: ) Run `map.sh`: - $ mv Homo_sapiens.GRCh38.84.gtf.gz FastqFile_processed/ - $ mv Homo_sapiens.GRCh38.dna_sm.primary_assembly.fa.gz FastqFile_processed/ - $ gunzip Homo_sapiens.GRCh38.84.gtf.gz - $ gunzip Homo_sapiens.GRCh38.dna_sm.primary_assembly.fa.gz - $ cd ../sequencing-pipeline/ - $ main-scripts/map.sh lists/candice_list 2> err.log | tee out.log + $ mv Homo_sapiens.GRCh38.84.gtf.gz FastqFile_processed/ + $ mv Homo_sapiens.GRCh38.dna_sm.primary_assembly.fa.gz FastqFile_processed/ + $ gunzip Homo_sapiens.GRCh38.84.gtf.gz + $ gunzip Homo_sapiens.GRCh38.dna_sm.primary_assembly.fa.gz + $ cd ../sequencing-pipeline/ + $ main-scripts/map.sh lists/candice_list 2> err.log | tee out.log #6. Analysis Summarization #7. Gene Differential Expression Analysis \ No newline at end of file