Update path to env with nnunet

[valosekj]

The following lines can be updated because SCT conda env now contains nnUNet. The path to SCT python is: $SCT_DIR/python/envs/venv_sct/bin/python

model-spinal-rootlets/inter-rater_variability/02_run_batch_inter_rater_variability.sh

Lines 100 to 102 in 8922091

	# TODO: the hard-coded path to the conda environment is not ideal. But the script also needs to be run inside the
	# sct_venv environment --> explore if two venvs can be activated at the same time
	${HOME}/miniconda3/envs/nnunet/bin/python ${PATH_REPO}/packaging/run_inference_single_subject.py -i ${file}.nii.gz -o ${file}_label-rootlet_nnunet.nii.gz -path-model ${PATH_NNUNET_MODEL} -fold ${FOLD}