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README.md

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@@ -6,6 +6,8 @@ Utility script to construct species phylogenies using BUSCOs. Works directly fro
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This pipeline runs directly on the output from BUSCO. Move results directories from each BUSCO run (begins with "run_" by default) into the same directory. Example structure, where `INPUT_DIRECTORY` is passed to the `-d` parameter of the pipeline:
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**Doesn't work with BUSCO4?**
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* INPUT_DIRECTORY
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* run_species1
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* run_species2

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