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Update example.sh
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example.sh

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -15,7 +15,7 @@ nbtemplate=nb_T1_2weeks.nii.gz
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name=$(echo $file | cut -d "_" -f2- )
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#atlasBREX: FNIRT
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sh atlasBREX.sh -b $btemplate -nb $nbtemplate -h $file -f 0.8 -reg 1 -w 5,5,5 -msk a,0,0
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bash atlasBREX.sh -b $btemplate -nb $nbtemplate -h $file -f 0.8 -reg 1 -w 5,5,5 -msk a,0,0
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wait
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#remove prefix and rename
@@ -28,7 +28,7 @@ rm -f *std2high*
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wait
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#atlasBREX: ANTs/SyN
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sh atlasBREX.sh -b $btemplate -nb $nbtemplate -h $file -f 0.8 -reg 2 -w 1 -msk a,0,0
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bash atlasBREX.sh -b $btemplate -nb $nbtemplate -h $file -f 0.8 -reg 2 -w 1 -msk a,0,0
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wait
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#remove prefix and rename

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