RUN

# This is the "go" script for PNEX2.
# Such a shell script makes repetitive compiling and running
# easy while debugging the code in a unix-based environment.

clear
# increased upper limite of shared memory in UBUNTU
ulimit -s unlimited
#ulimit stacksizae unlimited

# FFTW2 path for library
export LD_LIBRARY_PATH=/home/bob/FFTW2_ifort/lib:$LD_LIBRARY_PATH

# Code Directory and Run Directory
 codedir=/work/jose/ekman_bl
 rundir=/work/jose/ekman_bl/rundir_unst

# Exectuable Run file name (Should Match with NAME_EXE in Makefile)
NAME_EXE=unstratified

#Output log file name
NAME_OUT=log

cd $codedir

rm grid_def -f
ln -s $rundir/grid_def grid_def
rm input.dat -f
ln -s $rundir/input.dat input.dat

make clean
make

rm $rundir/$NAME_EXE
mv $NAME_EXE $rundir/
make clean 

cd $rundir
mpirun -np 16 $rundir/$NAME_EXE > $NAME_OUT  &