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modified: csubst-ci.yml
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.github/workflows/csubst-ci.yml

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@@ -34,16 +34,18 @@ jobs:
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pip
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condarc: |
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channels:
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- bioconda
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- conda-forge
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- bioconda
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channel_priority: strict
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cache-environment: true
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cache-downloads: true
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- name: Install runtime deps
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shell: bash -l {0}
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run: |
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micromamba install -y numpy=1.26.* cython=0.29.* iqtree biopython
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micromamba install -y \
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numpy=1.26.* cython=0.29.* iqtree \
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conda-forge::biopython conda-forge::requests
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- name: Install csubst (from source)
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if: matrix.install == 'source'
@@ -72,7 +74,9 @@ jobs:
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if-no-files-found: ignore
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retention-days: 7
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# --- command tests ---
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- name: Run command tests
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shell: bash -l {0}
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env:
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MPLBACKEND: Agg
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run: bash ci/csubst_commands.sh
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