kids-first
diff --git a/‎REFS/cell_line_supplemental.txt
-36 b/‎REFS/cell_line_supplemental.txt
-36
diff --git a/‎STUDY_CONFIGS/pbta_all_case_meta_config.json
+3-3 b/‎STUDY_CONFIGS/pbta_all_case_meta_config.json
+3-3
diff --git a/‎scripts/2021-Sep-7_ETL_DEPRECATED/1a_merge_cavatica_manifests.py
-40 b/‎scripts/2021-Sep-7_ETL_DEPRECATED/1a_merge_cavatica_manifests.py
-40
diff --git a/‎scripts/2021-Sep-7_ETL_DEPRECATED/1b_query_file_manifest.py
-88 b/‎scripts/2021-Sep-7_ETL_DEPRECATED/1b_query_file_manifest.py
-88
diff --git a/‎scripts/2021-Sep-7_ETL_DEPRECATED/2_query_ds_by_bs_id.py
-173 b/‎scripts/2021-Sep-7_ETL_DEPRECATED/2_query_ds_by_bs_id.py
-173
@@ -221,17 +221,17 @@
         "manifests": {
             "cbtn": {
                 "table": "bix_genomics_file.sd_bhjxbdqk-genomics_file_manifest",
-                "file_type": ["RSEM_gene","annofuse_filtered_fusions_tsv","annotated_public_outputs","ctrlfreec_pval","ctrlfreec_info","ctrlfreec_bam_seg"],
+                "file_type": ["RSEM_gene","annofuse_filtered_fusions_tsv","annotated_public_outputs","consensus_public_outputs","ctrlfreec_pval","ctrlfreec_info","ctrlfreec_bam_seg"],
                 "out_file": "cbtn_genomics_file_manifest.txt"
             },
             "x01": {
                 "table": "bix_genomics_file.sd_bhjxbdqk_x01-genomics_file_manifest",
-                "file_type": ["RSEM_gene","annofuse_filtered_fusions_tsv","annotated_public_outputs","ctrlfreec_pval","ctrlfreec_info","ctrlfreec_bam_seg"],
+                "file_type": ["RSEM_gene","annofuse_filtered_fusions_tsv","annotated_public_outputs","consensus_public_outputs","ctrlfreec_pval","ctrlfreec_info","ctrlfreec_bam_seg"],
                 "out_file": "x01_genomics_file_manifest.txt"
             },
             "cbtn_extra": {
                 "table": "bix_genomics_file.sd_bhjxbdqk_x01_extra-genomics_file_manifest",
-                "file_type": ["RSEM_gene","annofuse_filtered_fusions_tsv","annotated_public_outputs","ctrlfreec_pval","ctrlfreec_info","ctrlfreec_bam_seg"],
+                "file_type": ["RSEM_gene","annofuse_filtered_fusions_tsv","annotated_public_outputs","consensus_public_outputs","ctrlfreec_pval","ctrlfreec_info","ctrlfreec_bam_seg"],
                 "out_file": "cbtn_extra_genomics_file_manifest.txt"
             },
             "pnoc": {