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Error when running selection_pipeline.py #3

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aaannaw opened this issue Jul 29, 2024 · 1 comment
Open

Error when running selection_pipeline.py #3

aaannaw opened this issue Jul 29, 2024 · 1 comment

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@aaannaw
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aaannaw commented Jul 29, 2024

Hello, professor
We got the uploaded halictids.params file, which displayed the cds file path for every species. I am trying to use the script selection_pipeline.py to filter my orthogroups fgenerated orthofinder software. However, I got the error:
image
Because I did not find your orthogroups.txt in the website and I used the my orthogroups.txt generated by orthofinder like this:
image
And my halictids.params file is like this:
image
Could you give me any suggestions?
Best wishes,
Na Wan

@aaannaw
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aaannaw commented Jul 30, 2024

Hello, professor
Could you upload the cds.fa for every species in the uploaded halictids.params file.
Best wishes!
Na Wan

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