whole build script for the Docker image

Dockerfile

@@ -1,9 +1,72 @@
-FROM calthorpeanalytics/python3-geo:3.6.3-1.0.0
+FROM python:3.6-stretch
 
-RUN mkdir /code
-WORKDIR /code
+RUN mkdir -p /provisioning
+WORKDIR /provisioning
+
+# Install OS dependencies
+RUN apt-get update && apt-get install -y \
+      build-essential \
+      dialog \
+      curl \
+      less \
+      nano \
+      unzip \
+      vim \
+      gcc \
+      libgeos-dev \
+      zlib1g-dev && \
+    rm -rf /var/lib/apt/lists/*
+
+RUN echo "Installing Spatial Index library..." && \
+    mkdir -p /provisioning/spatialindex && \
+    cd /provisioning/spatialindex && \
+    curl -# -O http://download.osgeo.org/libspatialindex/spatialindex-src-1.8.5.tar.gz && \
+    tar -xzf spatialindex-src-1.8.5.tar.gz && \
+    cd spatialindex-src-1.8.5 && \
+    ./configure --prefix=/usr/local && \
+    make -j$(python -c 'import multiprocessing; print(multiprocessing.cpu_count())') && \
+    make install && \
+    ldconfig && \
+    rm -rf /provisioning/spatialindex*
+
+RUN echo "Installing GEOS library..." && \
+    mkdir -p /provisioning/geos && \
+    cd /provisioning/geos && \
+    curl -# -O http://download.osgeo.org/geos/geos-3.5.1.tar.bz2 && \
+    tar -xjf geos-3.5.1.tar.bz2 && \
+    cd geos-3.5.1 && \
+    ./configure && \
+    make -j$(python -c 'import multiprocessing; print(multiprocessing.cpu_count())') && \
+    make install && \
+    ldconfig -v && \
+    rm -rf /provisioning/geos*
 
-RUN pip install numpy==1.12.1 --src /usr/local/src
+RUN echo "Installing Proj4 library..." && \
+    mkdir -p /provisioning/proj4 && \
+    cd /provisioning/proj4 && \
+    curl -# -O http://download.osgeo.org/proj/proj-4.9.3.tar.gz && \
+    tar -xzf proj-4.9.3.tar.gz && \
+    cd proj-4.9.3 && \
+    ./configure && \
+    make -j$(python -c 'import multiprocessing; print(multiprocessing.cpu_count())') && \
+    make install && \
+    ldconfig -v && \
+    rm -rf /provisioning/proj4
+
+# basemap (incorrectly) requires numpy to be installed *before* installing it
+RUN pip install --upgrade numpy && \
+    echo "Installing Basemap plotting library..." && \
+    mkdir -p /provisioning/matplotlib-basemap && \
+    cd /provisioning/matplotlib-basemap && \
+    curl -# -o basemap-1.0.7rel.tar.gz https://codeload.github.com/matplotlib/basemap/tar.gz/v1.0.7rel && \
+    tar -xzf basemap-1.0.7rel.tar.gz && \
+    cd basemap-1.0.7rel && \
+    python setup.py install && \
+    rm -rf /provisioning/matplotlib-basemap
+
+RUN mkdir /code && \
+    pip install numpy==1.12.1 --src /usr/local/src
+WORKDIR /code
 
 COPY requirements.txt /code/
 RUN pip install -r requirements.txt --src /usr/local/src --exists-action=w

Makefile

@@ -6,7 +6,7 @@ performance:
 
 notebook:
 	docker-compose build
-	mkdir ./notebooks
+	mkdir -p ./notebooks
 	docker-compose up notebook
 
 docker-clean: