versioning script, archiver, and documentation update

Author: Ryan Calvin Barron

CITATION.cff

@@ -1,4 +1,4 @@
-version: 0.0.43
+version: 0.0.44
 message: "If you use this software, please cite it as below."
 authors:
   - family-names: Eren
@@ -20,7 +20,7 @@ authors:
   - family-names: Alexandrov
     given-names: Boian
 title: "Tensor Extraction of Latent Features (T-ELF)"
-version: 0.0.43
+version: 0.0.44
 url: https://github.com/lanl/T-ELF
 doi: 10.5281/zenodo.10257897
 date-released: 2023-12-04

CITATION.cff.bak

@@ -0,0 +1,26 @@
+version: 0.0.45
+message: "If you use this software, please cite it as below."
+authors:
+  - family-names: Eren
+    given-names: Maksim
+  - family-names: Solovyev
+    given-names: Nick
+  - family-names: Barron
+    given-names: Ryan
+  - family-names: Bhattarai
+    given-names: Manish
+  - family-names: Truong
+    given-names: Duc
+  - family-names: Boureima
+    given-names: Ismael
+  - family-names: Skau
+    given-names: Erik
+  - family-names: Rasmussen
+    given-names: Kim
+  - family-names: Alexandrov
+    given-names: Boian
+title: "Tensor Extraction of Latent Features (T-ELF)"
+version: 0.0.45
+url: https://github.com/lanl/T-ELF
+doi: 10.5281/zenodo.10257897
+date-released: 2023-12-04

TELF/version.py

@@ -1 +1 @@
-__version__ = "0.0.43"
+__version__ = "0.0.44"

TELF/version.py.bak

@@ -0,0 +1 @@
+__version__ = "0.0.45"

docs/.buildinfo

@@ -0,0 +1,4 @@
+# Sphinx build info version 1
+# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 8541cce001b52ed2e074c33e32340b3e
+tags: 645f666f9bcd5a90fca523b33c5a78b7

docs/ArcticFox.html

@@ -8,39 +8,36 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF.pre_processing.Beaver: Fast matrix and tensor building tool &#8212; TELF 0.0.43 documentation</title>
+    <title>TELF.pre_processing.Beaver: Fast matrix and tensor building tool &#8212; TELF 0.0.44 documentation</title>
 
 
 
   <script data-cfasync="false">
     document.documentElement.dataset.mode = localStorage.getItem("mode") || "";
     document.documentElement.dataset.theme = localStorage.getItem("theme") || "";
   </script>
-  <!-- 
-    this give us a css class that will be invisible only if js is disabled 
-  -->
-  <noscript>
-    <style>
-      .pst-js-only { display: none !important; }
-
-    </style>
-  </noscript>
 
   <!-- Loaded before other Sphinx assets -->
-  <link href="_static/styles/theme.css?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
-<link href="_static/styles/pydata-sphinx-theme.css?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
+  <link href="_static/styles/theme.css?digest=dfe6caa3a7d634c4db9b" rel="stylesheet" />
+<link href="_static/styles/bootstrap.css?digest=dfe6caa3a7d634c4db9b" rel="stylesheet" />
+<link href="_static/styles/pydata-sphinx-theme.css?digest=dfe6caa3a7d634c4db9b" rel="stylesheet" />
+
+  
+  <link href="_static/vendor/fontawesome/6.5.2/css/all.min.css?digest=dfe6caa3a7d634c4db9b" rel="stylesheet" />
+  <link rel="preload" as="font" type="font/woff2" crossorigin href="_static/vendor/fontawesome/6.5.2/webfonts/fa-solid-900.woff2" />
+<link rel="preload" as="font" type="font/woff2" crossorigin href="_static/vendor/fontawesome/6.5.2/webfonts/fa-brands-400.woff2" />
+<link rel="preload" as="font" type="font/woff2" crossorigin href="_static/vendor/fontawesome/6.5.2/webfonts/fa-regular-400.woff2" />
 
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=8f2a1f02" />
-    <link rel="stylesheet" type="text/css" href="_static/styles/sphinx-book-theme.css?v=a3416100" />
+    <link rel="stylesheet" type="text/css" href="_static/styles/sphinx-book-theme.css?v=eba8b062" />
     <link rel="stylesheet" type="text/css" href="_static/graphviz.css?v=4ae1632d" />
 
-  <!-- So that users can add custom icons -->
-  <script src="_static/scripts/fontawesome.js?digest=26a4bc78f4c0ddb94549"></script>
   <!-- Pre-loaded scripts that we'll load fully later -->
-  <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
-<link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />
+  <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=dfe6caa3a7d634c4db9b" />
+<link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=dfe6caa3a7d634c4db9b" />
+  <script src="_static/vendor/fontawesome/6.5.2/js/all.min.js?digest=dfe6caa3a7d634c4db9b"></script>
 
-    <script src="_static/documentation_options.js?v=b50b7b36"></script>
+    <script src="_static/documentation_options.js?v=201ef9e7"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
@@ -51,7 +48,6 @@
     <link rel="prev" title="TELF.factorization.SPLITTransfer: Supervised transfer learning method via SPLIT and NMFk" href="SPLITTransfer.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-  <meta name="docsearch:version" content="" />
   </head>
 
 
@@ -67,24 +63,36 @@
     <i class="fa-solid fa-arrow-up"></i>Back to top</button>
 
 
-  <dialog id="pst-search-dialog">
-    
+  <input type="checkbox"
+          class="sidebar-toggle"
+          id="pst-primary-sidebar-checkbox"/>
+  <label class="overlay overlay-primary" for="pst-primary-sidebar-checkbox"></label>
+  
+  <input type="checkbox"
+          class="sidebar-toggle"
+          id="pst-secondary-sidebar-checkbox"/>
+  <label class="overlay overlay-secondary" for="pst-secondary-sidebar-checkbox"></label>
+  
+  <div class="search-button__wrapper">
+    <div class="search-button__overlay"></div>
+    <div class="search-button__search-container">
 <form class="bd-search d-flex align-items-center"
       action="search.html"
       method="get">
   <i class="fa-solid fa-magnifying-glass"></i>
   <input type="search"
          class="form-control"
          name="q"
+         id="search-input"
          placeholder="Search..."
          aria-label="Search..."
          autocomplete="off"
          autocorrect="off"
          autocapitalize="off"
          spellcheck="false"/>
   <span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd>K</kbd></span>
-</form>
-  </dialog>
+</form></div>
+  </div>
 
   <div class="pst-async-banner-revealer d-none">
   <aside id="bd-header-version-warning" class="d-none d-print-none" aria-label="Version warning"></aside>
@@ -100,8 +108,7 @@
 
 
 
-      <dialog id="pst-primary-sidebar-modal"></dialog>
-      <div id="pst-primary-sidebar" class="bd-sidebar-primary bd-sidebar">
+      <div class="bd-sidebar-primary bd-sidebar">
 
 
 
@@ -126,16 +133,20 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.43 documentation</p>
+    <p class="title logo__title">TELF 0.0.44 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item">
 
-<button class="btn search-button-field search-button__button pst-js-only" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
- <i class="fa-solid fa-magnifying-glass"></i>
- <span class="search-button__default-text">Search</span>
- <span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd class="kbd-shortcut__modifier">K</kbd></span>
-</button></div>
+ <script>
+ document.write(`
+   <button class="btn search-button-field search-button__button" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
+    <i class="fa-solid fa-magnifying-glass"></i>
+    <span class="search-button__default-text">Search</span>
+    <span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd class="kbd-shortcut__modifier">K</kbd></span>
+   </button>
+ `);
+ </script></div>
         <div class="sidebar-primary-item"><nav class="bd-links bd-docs-nav" aria-label="Main">
     <div class="bd-toc-item navbar-nav active">
         <p aria-level="2" class="caption" role="heading"><span class="caption-text">Contents:</span></p>
@@ -335,16 +346,24 @@
 
 
 
-<button class="btn btn-sm nav-link pst-navbar-icon theme-switch-button pst-js-only" aria-label="Color mode" data-bs-title="Color mode"  data-bs-placement="bottom" data-bs-toggle="tooltip">
-  <i class="theme-switch fa-solid fa-sun                fa-lg" data-mode="light" title="Light"></i>
-  <i class="theme-switch fa-solid fa-moon               fa-lg" data-mode="dark"  title="Dark"></i>
-  <i class="theme-switch fa-solid fa-circle-half-stroke fa-lg" data-mode="auto"  title="System Settings"></i>
-</button>
+<script>
+document.write(`
+  <button class="btn btn-sm nav-link pst-navbar-icon theme-switch-button" title="light/dark" aria-label="light/dark" data-bs-placement="bottom" data-bs-toggle="tooltip">
+    <i class="theme-switch fa-solid fa-sun fa-lg" data-mode="light"></i>
+    <i class="theme-switch fa-solid fa-moon fa-lg" data-mode="dark"></i>
+    <i class="theme-switch fa-solid fa-circle-half-stroke fa-lg" data-mode="auto"></i>
+  </button>
+`);
+</script>
 
 
-<button class="btn btn-sm pst-navbar-icon search-button search-button__button pst-js-only" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
+<script>
+document.write(`
+  <button class="btn btn-sm pst-navbar-icon search-button search-button__button" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
     <i class="fa-solid fa-magnifying-glass fa-lg"></i>
-</button>
+  </button>
+`);
+</script>
 <button class="sidebar-toggle secondary-toggle btn btn-sm" title="Toggle secondary sidebar" data-bs-placement="bottom" data-bs-toggle="tooltip">
     <span class="fa-solid fa-list"></span>
 </button>
@@ -453,7 +472,7 @@ <h1>Example<a class="headerlink" href="#example" title="Link to this heading">#<
 </section>
 <section id="available-functions">
 <h1>Available Functions<a class="headerlink" href="#available-functions" title="Link to this heading">#</a></h1>
-<div class="pst-scrollable-table-container"><table class="autosummary longtable table autosummary">
+<div class="pst-scrollable-table-container"><table class="autosummary longtable table">
 <tbody>
 <tr class="row-odd"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">Beaver.__init__</span></code>([n_nodes, n_jobs])</p></td>
 <td><p></p></td>
@@ -505,7 +524,7 @@ <h1>Available Functions<a class="headerlink" href="#available-functions" title="
 others to do so.</p>
 <dl class="py class">
 <dt class="sig sig-object py" id="TELF.pre_processing.Beaver.beaver.Beaver">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">TELF.pre_processing.Beaver.beaver.</span></span><span class="sig-name descname"><span class="pre">Beaver</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">n_nodes</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_jobs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/TELF/pre_processing/Beaver/beaver.html#Beaver"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#TELF.pre_processing.Beaver.beaver.Beaver" title="Link to this definition">#</a></dt>
+<em class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">TELF.pre_processing.Beaver.beaver.</span></span><span class="sig-name descname"><span class="pre">Beaver</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">n_nodes</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_jobs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/TELF/pre_processing/Beaver/beaver.html#Beaver"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#TELF.pre_processing.Beaver.beaver.Beaver" title="Link to this definition">#</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <dl class="py attribute">
 <dt class="sig sig-object py" id="TELF.pre_processing.Beaver.beaver.Beaver.SUPPORTED_OUTPUT_FORMATS">
@@ -734,12 +753,12 @@ <h1>Available Functions<a class="headerlink" href="#available-functions" title="
 
 <dl class="py property">
 <dt class="sig sig-object py" id="TELF.pre_processing.Beaver.beaver.Beaver.n_jobs">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">n_jobs</span></span><a class="headerlink" href="#TELF.pre_processing.Beaver.beaver.Beaver.n_jobs" title="Link to this definition">#</a></dt>
+<em class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">n_jobs</span></span><a class="headerlink" href="#TELF.pre_processing.Beaver.beaver.Beaver.n_jobs" title="Link to this definition">#</a></dt>
 <dd></dd></dl>
 
 <dl class="py property">
 <dt class="sig sig-object py" id="TELF.pre_processing.Beaver.beaver.Beaver.n_nodes">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">n_nodes</span></span><a class="headerlink" href="#TELF.pre_processing.Beaver.beaver.Beaver.n_nodes" title="Link to this definition">#</a></dt>
+<em class="property"><span class="k"><span class="pre">property</span></span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">n_nodes</span></span><a class="headerlink" href="#TELF.pre_processing.Beaver.beaver.Beaver.n_nodes" title="Link to this definition">#</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
@@ -887,8 +906,7 @@ <h1>Available Functions<a class="headerlink" href="#available-functions" title="
 
 
 
-                <dialog id="pst-secondary-sidebar-modal"></dialog>
-                <div id="pst-secondary-sidebar" class="bd-sidebar-secondary bd-toc"><div class="sidebar-secondary-items sidebar-secondary__inner">
+                <div class="bd-sidebar-secondary bd-toc"><div class="sidebar-secondary-items sidebar-secondary__inner">
 
 
   <div class="sidebar-secondary-item">
@@ -968,8 +986,8 @@ <h1>Available Functions<a class="headerlink" href="#available-functions" title="
   </div>
 
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