Dockerfile

from pangeo/base-notebook-onbuild

USER root

# Julia dependencies
# install Julia packages in /opt/julia instead of $HOME
ENV JULIA_DEPOT_PATH=/opt/julia
ENV JULIA_PKGDIR=/opt/julia
ENV JULIA_VERSION=1.2.0

RUN mkdir /opt/julia-${JULIA_VERSION} && \
    cd /tmp && \
    wget -q https://julialang-s3.julialang.org/bin/linux/x64/`echo ${JULIA_VERSION} | cut -d. -f 1,2`/julia-${JULIA_VERSION}-linux-x86_64.tar.gz && \
    echo "926ced5dec5d726ed0d2919e849ff084a320882fb67ab048385849f9483afc47 *julia-${JULIA_VERSION}-linux-x86_64.tar.gz" | sha256sum -c - && \
    tar xzf julia-${JULIA_VERSION}-linux-x86_64.tar.gz -C /opt/julia-${JULIA_VERSION} --strip-components=1 && \
    rm /tmp/julia-${JULIA_VERSION}-linux-x86_64.tar.gz
RUN ln -fs /opt/julia-*/bin/julia /usr/local/bin/julia

# Show Julia where conda libraries are \
RUN mkdir /etc/julia && \
    echo "push!(Libdl.DL_LOAD_PATH, \"$CONDA_DIR/lib\")" >> /etc/julia/juliarc.jl

# Create JULIA_PKGDIR
RUN mkdir $JULIA_PKGDIR

# Change ownership so jovyan can use it
RUN chown jovyan $JULIA_PKGDIR
ADD fix-permissions /usr/local/bin/fix-permissions
RUN fix-permissions $JULIA_PKGDIR

USER $NB_UID

# Add Julia packages. Only add HDF5 if this is not a test-only build since
# it takes roughly half the entire build time of all of the images on Travis
# to add this one package and often causes Travis to timeout.
#
# Install IJulia as jovyan and then move the kernelspec out
# to the system share location. Avoids problems with runtime UID change not
# taking effect properly on the .local folder in the jovyan home dir.
RUN julia -e 'import Pkg; Pkg.update()' && \
    (test $TEST_ONLY_BUILD || julia -e 'import Pkg; Pkg.add("HDF5")') && \
    julia -e "using Pkg; pkg\"add IJulia\"; pkg\"precompile\""

# move kernelspec out of home \
# RUN mv $HOME/.local/share/jupyter/kernels/julia* $CONDA_DIR/share/jupyter/kernels/ && \
#     chmod -R go+rx $CONDA_DIR/share/jupyter && \
#     rm -rf $HOME/.local && \
#     fix-permissions $JULIA_PKGDIR $CONDA_DIR/share/jupyter