Merge pull request #442 from diana-hep/python3-only

MadMiner v0.8.0

Author: johannbrehmer

.travis.yml

@@ -7,14 +7,13 @@ services:
 - docker
 language: python
 python:
-- '2.7'
-- '3.5'
 - '3.6'
+- '3.7'
+- '3.8'
 install:
 - pip install -q --no-cache-dir -e .
 - travis_wait pip install -q --no-cache-dir -e .
 script:
-- pytest tests/test_imports.py
 - pytest -s tests/test_ratio_estimation.py
 - pytest -s tests/test_nuisance.py
 jobs:

Dockerfile

@@ -4,16 +4,10 @@ FROM rootproject/root-ubuntu
 USER root
 
 RUN apt-get update && apt-get install -y \
-    python-dev \
-    python-tk \
     python3-tk \
     python3-pip
 
-# Python2 pip is not longer shiped with Ubuntu (20.04+)
-RUN curl "https://bootstrap.pypa.io/get-pip.py" --output get-pip.py && \
-    python get-pip.py
-
-RUN pip install --upgrade --no-cache-dir pip && \
-    pip install --upgrade --no-cache-dir madminer
+RUN pip3 install --upgrade --no-cache-dir pip && \
+    pip3 install --upgrade --no-cache-dir madminer
 
 WORKDIR /home/

docs/conf.py

@@ -15,13 +15,13 @@
 # import sys
 # sys.path.insert(0, os.path.abspath('.'))
 
-import os
+from pathlib import Path
 
 # -- Project information -----------------------------------------------------
 
 info = {}
-project_folder = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
-with open(os.path.join(project_folder, 'madminer', '__info__.py')) as f:
+project_folder = Path(__file__).parent.parent
+with open(project_folder.joinpath('madminer', '__info__.py')) as f:
     exec(f.read(), info)
 
 project = 'MadMiner'
@@ -40,8 +40,7 @@
 # needs_sphinx = '1.0'
 
 # Add any Sphinx extension module names here, as strings. They can be
-# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
-# ones.
+# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
 extensions = [
     'sphinx.ext.autodoc',
     'sphinx.ext.viewcode',
@@ -56,7 +55,6 @@
 # You can specify multiple suffix as a list of string:
 #
 source_suffix = ['.rst', '.md']
-#source_suffix = '.rst'
 
 # Markdown support
 from recommonmark.parser import CommonMarkParser
@@ -107,11 +105,11 @@
 #
 # The default sidebars (for documents that don't match any pattern) are
 # defined by theme itself.  Builtin themes are using these templates by
-# default: ``['localtoc.html', 'relations.html', 'sourcelink.html',
-# 'searchbox.html']``.
+# default: ``['localtoc.html', 'relations.html', 'sourcelink.html', 'searchbox.html']``.
 #
-# html_sidebars = {"toc.rst"}
-html_sidebars = { '**': ['globaltoc.html', 'relations.html', 'sourcelink.html', 'searchbox.html'] }
+html_sidebars = {
+    '**': ['globaltoc.html', 'relations.html', 'sourcelink.html', 'searchbox.html'],
+}
 
 
 # -- Options for HTMLHelp output ---------------------------------------------
@@ -154,8 +152,7 @@
 # One entry per manual page. List of tuples
 # (source start file, name, description, authors, manual section).
 man_pages = [
-    (master_doc, 'madminer', 'MadMiner Documentation',
-     [authors], 1)
+    (master_doc, 'madminer', 'MadMiner Documentation', [authors], 1),
 ]
 
 

docs/installation.md

@@ -3,10 +3,8 @@
 ## Simulator dependencies
 
 Make sure the following tools are installed and running:
-- MadGraph (we've tested our setup with MG5_aMC v2.6.2 and v2.6.5). See
-  [https://launchpad.net/mg5amcnlo](https://launchpad.net/mg5amcnlo) for installation instructions. Note that MadGraph
-  requires a Fortran compiler as well as Python 2.6 or 2.7. (Note that you can still run most MadMiner analysis steps
-  with Python 3.)
+- MadGraph (we've tested our setup with MG5_aMC v2.8.0+). See [https://launchpad.net/mg5amcnlo](https://launchpad.net/mg5amcnlo)
+  for installation instructions. Note that MadGraph requires a Fortran compiler as well as Python 3.6+.
 - For the analysis of systematic uncertainties, LHAPDF6 has to be installed with Python support (see also
   [the documentation of MadGraph's systematics tool](https://cp3.irmp.ucl.ac.be/projects/madgraph/wiki/Systematics)).
 

environment.yml

@@ -10,7 +10,6 @@ dependencies:
 - h5py
 - scipy>=1.0.0
 - scikit-learn>=0.19.0
-- six
 - pytorch>=1.0.0
 - pytest
 - pip

madminer/__info__.py

@@ -1,3 +1,3 @@
 __authors__ = ", ".join(["Johann Brehmer", "Felix Kling", "Irina Espejo", "Sinclert Perez", "Kyle Cranmer"])
 
-__version__ = "0.7.7"
+__version__ = "0.8.0"

madminer/__init__.py

@@ -2,9 +2,20 @@
 from .analysis import DataAnalyzer
 from .core import MadMiner
 from .delphes import DelphesReader
-from .fisherinformation import FisherInformation, InformationGeometry, profile_information, project_information
+from .fisherinformation import (
+    FisherInformation,
+    InformationGeometry,
+    profile_information,
+    project_information,
+)
 from .lhe import LHEReader
-from .likelihood import HistoLikelihood, NeuralLikelihood, fix_params, project_log_likelihood, profile_log_likelihood
+from .likelihood import (
+    HistoLikelihood,
+    NeuralLikelihood,
+    fix_params,
+    project_log_likelihood,
+    profile_log_likelihood,
+)
 from .limits import AsymptoticLimits
 from .ml import (
     ParameterizedRatioEstimator,