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Bug: Multiple cores do not work together with uBAM input #811

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rhpvorderman opened this issue Oct 7, 2024 · 1 comment
Closed

Bug: Multiple cores do not work together with uBAM input #811

rhpvorderman opened this issue Oct 7, 2024 · 1 comment

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@rhpvorderman
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Single threaded works fine. Multiple threading invokes the chunker in dnaio but that only supports fastq. As a result a FileFormatException will be raised.

Luckily BAM is extremely easy to chunk, so that can be added to dnaio. I will do so. I am currently working on a nanopore project, so I can justify pouring some time in dnaio.
@rhpvorderman rhpvorderman changed the title Bug: Multiple cores do not work together with uBAM output Bug: Multiple cores do not work together with uBAM input Oct 7, 2024
@rhpvorderman rhpvorderman mentioned this issue Oct 7, 2024
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@marcelm
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marcelm commented Nov 13, 2024

Closed by #812

@marcelm marcelm closed this as completed Nov 13, 2024
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@marcelm @rhpvorderman