diff --git a/scripts/Readme.md b/scripts/Readme.md index 4f573360..847c3fca 100644 --- a/scripts/Readme.md +++ b/scripts/Readme.md @@ -1,37 +1,34 @@ # Wolfram engine and script - -Install the Wolfram Engine - +- Install the free Wolfram Engine as described here: https://support.wolfram.com/45743 -Install WolframScript - +- Install WolframScript as described here https://reference.wolfram.com/language/workflow/InstallWolframScript.html # QMRITools -Install QMRITools using WolframScript +Install QMRITools for the worlfram enging using the `Install_QMRITools.wls` WolframScript -The latest release link can be found on the releases [page](https://github.com/mfroeling/QMRITools/releases) +The latest release link needed for the command line command can be found on the releases [page](https://github.com/mfroeling/QMRITools/releases) -wolframscript -f "path to file\Install_QMRITools.wls" https://github.com/mfroeling/QMRITools/releases/download/3.17.0/QMRITools-x.xx.x.paclet +`wolframscript -f "path to file\Install_QMRITools.wls" https://github.com/mfroeling/QMRITools/releases/download/3.17.0/QMRITools-x.xx.x.paclet` # Segmentation script -Run the segmentation script: +Run the segmentation script (networks are currelty for out-phase dixon data): -wolframscript -f "path to file\Segment_Nii.wls" "file to be segmented.nii.gz" "output file.nii" +`wolframscript -f "path to file\Segment_Nii.wls" "file to be segmented.nii.gz" "output file.nii"` For the situation where you run the scrip from its own folder with the test folder also there this will be script -wolframscript -f "Segment_Nii.wls" "test data\test.nii.gz" "test data\out.nii" +`wolframscript -f "Segment_Nii.wls" "test data\test.nii.gz" "test data\out.nii"`
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