Adding LSM to micro-manager nightly build #14
Description
@marktsuchida I'm trying to get LSM (the java plugin) into the micro-manager nightly builds. Wondering what the best way to do this is. Right now, LSM is set up a maven project, and I haven't yet, but could, push it to a maven repo from which it should be downloaded.
Or, I could have it build through Ant like the other plugins. However, I wasn't able to locally build it (or any other plugins). Typing the commands from the instructions , it seems that the dependencies weren't downloaded. I see this with a fresh clone of the repo. Am I missing something obvious?
C:\Users\henry\GitRepos\mm2\micro-manager> ant -f buildscripts/fetchdeps.xml
Buildfile: C:\Users\henry\GitRepos\mm2\micro-manager\buildscripts\fetchdeps.xml
download-ivy:
[mkdir] Created dir: C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\ivy
[get] Getting: https://repo1.maven.org/maven2/org/apache/ivy/ivy/2.3.0/ivy-2.3.0.jar
[get] To: C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\ivy\ivy-2.3.0.jar
init-ivy:
resolve:
[ivy:configure] :: Apache Ivy 2.3.0 - 20130110142753 :: http://ant.apache.org/ivy/ ::
[ivy:configure] :: loading settings :: file = C:\Users\henry\GitRepos\mm2\micro-manager\buildscripts\ivysettings.xml
[ivy:resolve] :: resolving dependencies :: org.micromanager#micromanager;working@DESKTOP-0R7THDI
[ivy:resolve] confs: [build, test, compile, optional, imagej, runtime]
[ivy:resolve] found ant-contrib#ant-contrib;1.0b3 in central
[ivy:resolve] found junit#junit;4.11 in central
[ivy:resolve] found org.hamcrest#hamcrest-core;1.3 in central
[ivy:resolve] found org.msgpack#msgpack;0.6.12 in central
[ivy:resolve] found com.googlecode.json-simple#json-simple;1.1.1 in central
[ivy:resolve] found org.javassist#javassist;3.18.1-GA in central
[ivy:resolve] found com.fifesoft#rsyntaxtextarea;2.6.1 in central
[ivy:resolve] found com.google.code.gson#gson;2.2.4 in central
[ivy:resolve] found com.google.guava#guava;17.0 in central
[ivy:resolve] found com.google.protobuf#protobuf-java;2.6.1 in central
[ivy:resolve] found com.miglayout#miglayout-swing;4.2 in central
[ivy:resolve] found com.miglayout#miglayout-core;4.2 in central
[ivy:resolve] found net.imglib2#imglib2;5.6.3 in central
[ivy:resolve] found ome#formats-api;5.1.1 in imagej-net
[ivy:resolve] found ome#formats-common;5.1.1 in imagej-net
[ivy:resolve] found com.esotericsoftware.kryo#kryo;2.24.0 in central
[ivy:resolve] found com.esotericsoftware.minlog#minlog;1.2 in central
[ivy:resolve] found org.objenesis#objenesis;2.1 in central
[ivy:resolve] found joda-time#joda-time;2.2 in central
[ivy:resolve] found org.slf4j#slf4j-api;1.7.6 in central
[ivy:resolve] found ch.qos.logback#logback-core;1.1.1 in central
[ivy:resolve] found ch.qos.logback#logback-classic;1.1.1 in central
[ivy:resolve] found xalan#serializer;2.7.1 in central
[ivy:resolve] found xml-apis#xml-apis;1.3.04 in central
[ivy:resolve] found xalan#xalan;2.7.1 in central
[ivy:resolve] found ome#ome-xml;5.1.1 in imagej-net
[ivy:resolve] found org.apache-extras.beanshell#bsh;2.0b6 in central
[ivy:resolve] found org.apache.commons#commons-lang3;3.5 in central
[ivy:resolve] found org.apache.commons#commons-math;2.2 in central
[ivy:resolve] found org.apache.commons#commons-math3;3.6.1 in central
[ivy:resolve] found commons-io#commons-io;2.11.0 in central
[ivy:resolve] found org.clojure#clojure;1.3.0 in central
[ivy:resolve] found org.clojure#core.cache;0.6.2 in central
[ivy:resolve] found org.clojure#core.memoize;0.5.2 in central
[ivy:resolve] found org.clojure#data.json;0.1.1 in central
[ivy:resolve] found org.jfree#jcommon;1.0.24 in central
[ivy:resolve] found org.jfree#jfreechart;1.5.0 in central
[ivy:resolve] found org.scijava#scijava-common;2.77.0 in central
[ivy:resolve] found org.scijava#parsington;1.0.3 in central
[ivy:resolve] found org.bushe#eventbus;1.4 in central
[ivy:resolve] found org.zeromq#jeromq;0.5.1 in central
[ivy:resolve] found eu.neilalexander#jnacl;1.0.0 in central
[ivy:resolve] found org.micro-manager.acqengj#AcqEngJ;0.20.0 in central
[ivy:resolve] found org.micro-manager.mmcorej#MMCoreJ;10.1.1.0 in central
[ivy:resolve] found org.micro-manager.ndviewer#NDViewer;0.6.8 in central
[ivy:resolve] found com.miglayout#miglayout;3.7.4 in central
[ivy:resolve] found org.micro-manager.ndtiffstorage#NDTiffStorage;2.6.4 in central
[ivy:resolve] found org.micro-manager.pycro-manager#PycroManagerJava;0.31.0 in central
[ivy:resolve] found io.scif#scifio;0.37.3 in imagej-net
[ivy:resolve] found io.scif#scifio-jai-imageio;1.1.1 in imagej-net
[ivy:resolve] found net.imagej#imagej-common;0.26.1 in imagej-net
[ivy:resolve] found net.imglib2#imglib2-roi;0.5.2 in imagej-net
[ivy:resolve] found net.imglib2#imglib2-realtransform;2.0.0 in imagej-net
[ivy:resolve] found gov.nist.math#jama;1.0.3 in central
[ivy:resolve] found jitk#jitk-tps;3.0.0 in imagej-net
[ivy:resolve] found net.sf.trove4j#trove4j;3.0.3 in central
[ivy:resolve] found edu.ucar#udunits;4.3.18 in imagej-net
[ivy:resolve] found net.imglib2#imglib2-cache;1.0.0-beta-9 in imagej-net
[ivy:resolve] found com.github.ben-manes.caffeine#caffeine;2.4.0 in central
[ivy:resolve] found jitk#jitk-tps;3.0.2 in imagej-net
[ivy:resolve] found org.slf4j#slf4j-api;1.7.30 in central
[ivy:resolve] found net.clearvolume#clearvolume;1.4.1 in imagej-net
[ivy:resolve] found commons-lang#commons-lang;2.6 in central
[ivy:resolve] found args4j#args4j;2.0.29 in central
[ivy:resolve] found com.apple#AppleJavaExtensions;1.4 in central
[ivy:resolve] found javax.mail#mail;1.5.0-b01 in central
[ivy:resolve] found javax.activation#activation;1.1 in central
[ivy:resolve] found net.clearcontrol#badtrack;0.1.4 in imagej-net
[ivy:resolve] found net.clearvolume#clearcl;0.5.2 in imagej-net
[ivy:resolve] found net.coremem#coremem;0.4.4 in imagej-net
[ivy:resolve] found com.nativelibs4java#bridj;0.7.0 in central
[ivy:resolve] found com.google.android.tools#dx;1.7 in central
[ivy:resolve] found com.nativelibs4java#javacl;1.0.0-RC4 in central
[ivy:resolve] found com.nativelibs4java#javacl-core;1.0.0-RC4 in central
[ivy:resolve] found com.nativelibs4java#opencl4java;1.0.0-RC4 in central
[ivy:resolve] found com.nativelibs4java#nativelibs4java-utils;1.6 in central
[ivy:resolve] found org.jocl#jocl;2.0.0 in central
[ivy:resolve] found javax.vecmath#vecmath;1.5.2 in central
[ivy:resolve] found ome#bio-formats-tools;5.5.3 in imagej-net
[ivy:resolve] found ome#formats-api;5.5.3 in imagej-net
[ivy:resolve] found org.openmicroscopy#ome-xml;5.5.4 in central
[ivy:resolve] found org.openmicroscopy#ome-common;5.3.1 in central
[ivy:resolve] found xalan#serializer;2.7.2 in central
[ivy:resolve] found xalan#xalan;2.7.2 in central
[ivy:resolve] found ome#formats-bsd;5.5.3 in imagej-net
[ivy:resolve] found ome#jai_imageio;5.5.3 in imagej-net
[ivy:resolve] found org.openmicroscopy#specification;5.5.4 in central
[ivy:resolve] found ome#turbojpeg;5.5.3 in imagej-net
[ivy:resolve] found org.scijava#native-lib-loader;2.1.4 in central
[ivy:resolve] found com.jgoodies#jgoodies-forms;1.7.2 in central
[ivy:resolve] found com.jgoodies#jgoodies-common;1.7.0 in central
[ivy:resolve] found org.perf4j#perf4j;0.9.13 in central
[ivy:resolve] found com.drewnoakes#metadata-extractor;2.6.2 in central
[ivy:resolve] found com.adobe.xmp#xmpcore;5.1.2 in central
[ivy:resolve] found xerces#xercesImpl;2.8.1 in central
[ivy:resolve] found ome#formats-gpl;5.5.3 in imagej-net
[ivy:resolve] found org.openmicroscopy#ome-mdbtools;5.3.0 in central
[ivy:resolve] found org.openmicroscopy#metakit;5.3.0 in central
[ivy:resolve] found org.openmicroscopy#ome-poi;5.3.1 in central
[ivy:resolve] found commons-logging#commons-logging;1.1.1 in central
[ivy:resolve] found ome#jxrlib-all;0.2.1 in imagej-net
[ivy:resolve] found edu.ucar#netcdf;4.3.22 in central
[ivy:resolve] found woolz#JWlz;1.4.0 in imagej-net
[ivy:resolve] found ch.systems.cisd#jhdf5;14.12.0 in imagej-net
[ivy:resolve] found junit#junit;4.12 in central
[ivy:resolve] found net.clearvolume#clearaudio;1.0.2 in imagej-net
[ivy:resolve] found net.clearvolume#cleargl;2.2.6 in imagej-net
[ivy:resolve] found org.jogamp.gluegen#gluegen-rt-main;2.3.2 in central
[ivy:resolve] found org.jogamp.gluegen#gluegen-rt;2.3.2 in central
[ivy:resolve] found org.jogamp.jogl#jogl-all-main;2.3.2 in central
[ivy:resolve] found org.jogamp.jogl#jogl-all;2.3.2 in central
[ivy:resolve] found net.clearcontrol#clearcl;0.6.0 in imagej-net
[ivy:resolve] found net.coremem#coremem;0.4.5 in imagej-net
[ivy:resolve] found net.java.dev.jna#jna;4.5.1 in central
[ivy:resolve] found net.java.dev.jna#jna-platform;4.5.1 in central
[ivy:resolve] found org.jocl#jocl;2.0.1 in central
[ivy:resolve] found net.clearcontrol#coremem;0.4.5 in imagej-net
[ivy:resolve] found org.boofcv#boofcv-ip;0.36 in central
[ivy:resolve] found org.georegression#georegression;0.22 in central
[ivy:resolve] found org.ddogleg#ddogleg;0.18 in central
[ivy:resolve] found org.ejml#ejml-core;0.39 in central
[ivy:resolve] found com.google.code.findbugs#jsr305;3.0.2 in central
[ivy:resolve] found org.ejml#ejml-fdense;0.39 in central
[ivy:resolve] found org.ejml#ejml-ddense;0.39 in central
[ivy:resolve] found org.ejml#ejml-simple;0.39 in central
[ivy:resolve] found org.ejml#ejml-cdense;0.39 in central
[ivy:resolve] found org.ejml#ejml-zdense;0.39 in central
[ivy:resolve] found org.ejml#ejml-dsparse;0.39 in central
[ivy:resolve] found org.ejml#ejml-fsparse;0.39 in central
[ivy:resolve] found javax.annotation#jsr250-api;1.0 in central
[ivy:resolve] found org.boofcv#boofcv-types;0.36 in central
[ivy:resolve] found org.boofcv#boofcv-geo;0.36 in central
[ivy:resolve] found #iconloader;GIT in thirdpartypublic
[ivy:resolve] found #DT1.2; in thirdpartypublic
[ivy:resolve] found org.micromanager#jxinput;0.8 in thirdpartypublic
[ivy:resolve] found net.imagej#ij;1.51s in central
[ivy:resolve] found org.swinglabs#swingx;0.9.5 in central
[ivy:resolve] downloading https://repo1.maven.org/maven2/org/micro-manager/acqengj/AcqEngJ/0.20.0/AcqEngJ-0.20.0.jar ...
[ivy:resolve] ...... (71kB)
[ivy:resolve] .. (0kB)
[ivy:resolve] [SUCCESSFUL ] org.micro-manager.acqengj#AcqEngJ;0.20.0!AcqEngJ.jar (98ms)
[ivy:resolve] downloading https://repo1.maven.org/maven2/org/micro-manager/ndviewer/NDViewer/0.6.8/NDViewer-0.6.8.jar ...
[ivy:resolve] ............. (179kB)
[ivy:resolve] .. (0kB)
[ivy:resolve] [SUCCESSFUL ] org.micro-manager.ndviewer#NDViewer;0.6.8!NDViewer.jar (53ms)
[ivy:resolve] downloading https://repo1.maven.org/maven2/org/micro-manager/ndtiffstorage/NDTiffStorage/2.6.4/NDTiffStorage-2.6.4.jar ...
[ivy:resolve] ...... (66kB)
[ivy:resolve] .. (0kB)
[ivy:resolve] [SUCCESSFUL ] org.micro-manager.ndtiffstorage#NDTiffStorage;2.6.4!NDTiffStorage.jar (96ms)
[ivy:resolve] downloading https://repo1.maven.org/maven2/org/micro-manager/pycro-manager/PycroManagerJava/0.31.0/PycroManagerJava-0.31.0.jar ...
[ivy:resolve] ..... (61kB)
[ivy:resolve] .. (0kB)
[ivy:resolve] [SUCCESSFUL ] org.micro-manager.pycro-manager#PycroManagerJava;0.31.0!PycroManagerJava.jar (35ms)
[ivy:resolve] :: resolution report :: resolve 2855ms :: artifacts dl 389ms
[ivy:resolve] :: evicted modules:
[ivy:resolve] ome#formats-api;5.1.1 by [ome#formats-api;5.5.3] in [compile]
[ivy:resolve] org.slf4j#slf4j-api;1.7.6 by [org.slf4j#slf4j-api;1.7.30] in [compile]
[ivy:resolve] xalan#serializer;2.7.1 by [xalan#serializer;2.7.2] in [compile]
[ivy:resolve] xalan#xalan;2.7.1 by [xalan#xalan;2.7.2] in [compile]
[ivy:resolve] org.clojure#core.cache;0.6.1 by [org.clojure#core.cache;0.6.2] in [compile]
[ivy:resolve] org.micro-manager.acqengj#AcqEngJ;LATEST by [org.micro-manager.acqengj#AcqEngJ;0.20.0] in [compile]
[ivy:resolve] org.micro-manager.ndviewer#NDViewer;LATEST by [org.micro-manager.ndviewer#NDViewer;0.6.8] in [compile]
[ivy:resolve] org.micro-manager.ndtiffstorage#NDTiffStorage;LATEST by [org.micro-manager.ndtiffstorage#NDTiffStorage;2.6.4] in [compile]
[ivy:resolve] net.imglib2#imglib2;5.5.0 by [net.imglib2#imglib2;5.6.3] in [compile]
[ivy:resolve] jitk#jitk-tps;3.0.0 by [jitk#jitk-tps;3.0.2] in [compile]
[ivy:resolve] org.scijava#scijava-common;2.76.0 by [org.scijava#scijava-common;2.77.0] in [compile]
[ivy:resolve] commons-io#commons-io;2.5 by [commons-io#commons-io;2.11.0] in [compile]
[ivy:resolve] junit#junit;4.11 by [junit#junit;4.12] in [compile]
[ivy:resolve] net.coremem#coremem;0.4.4 by [net.coremem#coremem;0.4.5] in [compile]
[ivy:resolve] org.jocl#jocl;2.0.0 by [org.jocl#jocl;2.0.1] in [compile]
[ivy:resolve] xml-apis#xml-apis;1.3.03 by [xml-apis#xml-apis;1.3.04] in [compile]
[ivy:resolve] org.slf4j#slf4j-api;1.7.5 by [org.slf4j#slf4j-api;1.7.6] in [compile]
[ivy:resolve] net.clearvolume#cleargl;2.1.0 by [net.clearvolume#cleargl;2.2.6] in [compile]
[ivy:resolve] org.ejml#ejml-core;0.38 by [org.ejml#ejml-core;0.39] in [compile]
---------------------------------------------------------------------
| | modules || artifacts |
| conf | number| search|dwnlded|evicted|| number|dwnlded|
---------------------------------------------------------------------
| build | 1 | 0 | 0 | 0 || 1 | 0 |
| test | 5 | 0 | 0 | 0 || 5 | 0 |
| compile | 140 | 4 | 4 | 19 || 132 | 4 |
| optional | 2 | 0 | 0 | 0 || 2 | 0 |
| imagej | 1 | 0 | 0 | 0 || 1 | 0 |
| runtime | 1 | 0 | 0 | 0 || 1 | 0 |
---------------------------------------------------------------------
[ivy:retrieve] :: retrieving :: org.micromanager#micromanager [sync]
[ivy:retrieve] confs: [build, test, compile, optional, imagej, runtime]
[ivy:retrieve] conflict on C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\coremem-0.4.5.jar in [compile]: 0.4.5 won
[ivy:retrieve] 141 artifacts copied, 0 already retrieved (81615kB/308ms)
BUILD SUCCESSFUL
Total time: 4 seconds
C:\Users\henry\GitRepos\mm2\micro-manager> ant build-buildtools
Buildfile: C:\Users\henry\GitRepos\mm2\micro-manager\build.xml
build-buildtools:
compile:
[mkdir] Created dir: C:\Users\henry\GitRepos\mm2\micro-manager\build\intermediates\Classes\AntExtensions
[mm-ant-javac] Compiling 1 source file to C:\Users\henry\GitRepos\mm2\micro-manager\build\intermediates\Classes\AntExtensions
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\slf4j-api-1.7.6.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\xml-apis.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\xercesImpl.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\serializer.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\udunits-4.3.22.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\commons-httpclient-3.1.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\commons-codec-1.2.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\jcl-over-slf4j-1.7.5.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\slf4j-api-1.7.5.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\jdom2-2.0.4.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\jcip-annotations-1.0.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\jna-3.0.9.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\quartz-2.1.1.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\c3p0-0.9.1.1.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\protobuf-java-2.5.0.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\ehcache-core-2.6.2.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\je-4.0.92.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\gluegen-rt-2.3.2-natives-android-aarch64.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\gluegen-rt-2.3.2-natives-android-armv6.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\gluegen-rt-2.3.2-natives-linux-armv6.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\gluegen-rt-2.3.2-natives-linux-armv6hf.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\gluegen-rt-2.3.2-natives-solaris-amd64.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\gluegen-rt-2.3.2-natives-solaris-i586.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\jogl-all-2.3.2-natives-android-aarch64.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\jogl-all-2.3.2-natives-android-armv6.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\jogl-all-2.3.2-natives-linux-armv6.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\jogl-all-2.3.2-natives-linux-armv6hf.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\jogl-all-2.3.2-natives-solaris-amd64.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\jogl-all-2.3.2-natives-solaris-i586.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\serializer-2.7.1.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\xalan-2.7.1.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\imglib2-5.1.0.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\imglib2-roi-0.5.1.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\jitk-tps-3.0.0.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\ejml-0.24.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\log4j-1.2.17.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\scijava-common-2.73.0.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\parsington-1.0.1.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\imglib2-5.2.0.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\imglib2-5.5.0.jar": no such file or directory
[mm-ant-javac] warning: [path] bad path element "C:\Users\henry\GitRepos\mm2\micro-manager\dependencies\artifacts\compile\scijava-common-2.76.0.jar": no such file or directory
copy-files:
jar:
[mkdir] Created dir: C:\Users\henry\GitRepos\mm2\micro-manager\build\Java
[jar] Building jar: C:\Users\henry\GitRepos\mm2\micro-manager\build\Java\AntExtensions.jar
BUILD SUCCESSFUL
Total time: 1 second
C:\Users\henry\GitRepos\mm2\micro-manager>cd plugins/
C:\Users\henry\GitRepos\mm2\micro-manager\plugins>dir
Volume in drive C is OS
Volume Serial Number is 6EAF-7763
Directory of C:\Users\henry\GitRepos\mm2\micro-manager\plugins
01/11/2023 10:47 AM <DIR> .
01/11/2023 10:47 AM <DIR> ..
01/11/2023 10:47 AM <DIR> AcquireMultipleRegions
01/11/2023 10:47 AM <DIR> ASIdiSPIM
01/11/2023 10:47 AM <DIR> ASIRingTIRF
01/11/2023 10:47 AM <DIR> Assemble
01/11/2023 10:47 AM <DIR> autolase
01/11/2023 10:47 AM 1,017 build.xml
01/11/2023 10:47 AM <DIR> ChannelCorrector
01/11/2023 10:47 AM 277 clojurepluginbuild.xml
01/11/2023 10:47 AM 289 clojurepluginbuild_noaot.xml
01/11/2023 10:47 AM <DIR> CRISP
01/11/2023 10:47 AM <DIR> DemoCustomDisplay
01/11/2023 10:47 AM <DIR> Duplicator
01/11/2023 10:47 AM <DIR> Emu
01/11/2023 10:47 AM <DIR> Example
01/11/2023 10:47 AM <DIR> FrameCombiner
01/11/2023 10:47 AM <DIR> Gamepad
01/11/2023 10:47 AM <DIR> Gaussian
01/11/2023 10:47 AM <DIR> HCS
01/11/2023 10:47 AM <DIR> HelloWorld
01/11/2023 10:47 AM <DIR> IlluminateLED
01/11/2023 10:47 AM <DIR> ImageFlipper
01/11/2023 10:47 AM <DIR> IntelligentAcquisition
01/11/2023 10:47 AM 271 javapluginbuild.xml
01/11/2023 10:47 AM <DIR> Magellan
01/11/2023 10:47 AM 1,407 Makefile.am
01/11/2023 10:47 AM <DIR> MMClearVolumePlugin
01/11/2023 10:47 AM <DIR> MultiAndor
01/11/2023 10:47 AM <DIR> MultiChannelShading
01/11/2023 10:47 AM <DIR> pgFocus
01/11/2023 10:47 AM <DIR> PipelineSaver
01/11/2023 10:47 AM 559 pluginpaths.xml
01/11/2023 10:47 AM 1,484 pluginprops.xml
01/11/2023 10:47 AM <DIR> PointAndShootAnalysis
01/11/2023 10:47 AM <DIR> Projector
01/11/2023 10:47 AM <DIR> PTCTools
01/11/2023 10:47 AM <DIR> RandomizePositionNames
01/11/2023 10:47 AM <DIR> RatioImaging
01/11/2023 10:47 AM 177 README.txt
01/11/2023 10:47 AM <DIR> Recall
01/11/2023 10:47 AM <DIR> RTIntensities
01/11/2023 10:47 AM <DIR> SequenceBufferMonitor
01/11/2023 10:47 AM <DIR> SharpnessInspector
01/11/2023 10:47 AM <DIR> SlideExplorer
01/11/2023 10:47 AM <DIR> SnapOnMove
01/11/2023 10:47 AM <DIR> SplitView
01/11/2023 10:47 AM <DIR> Tracker
01/11/2023 10:47 AM <DIR> WhiteBalance
01/11/2023 10:47 AM <DIR> ZProjector
8 File(s) 5,481 bytes
42 Dir(s) 639,984,791,552 bytes free
Then try building a plugin
C:\Users\henry\GitRepos\mm2\micro-manager\plugins>cd SequenceBufferMonitor
C:\Users\henry\GitRepos\mm2\micro-manager\plugins\SequenceBufferMonitor>ant jar
Buildfile: C:\Users\henry\GitRepos\mm2\micro-manager\plugins\SequenceBufferMonitor\build.xml
prerequisites:
check-deps:
clean-if-jars-changed:
prepare:
compile:
[mkdir] Created dir: C:\Users\henry\GitRepos\mm2\micro-manager\build\intermediates\Classes\plugins\SequenceBufferMonitor
[mm-javac] Compiling 2 source files to C:\Users\henry\GitRepos\mm2\micro-manager\build\intermediates\Classes\plugins\SequenceBufferMonitor
BUILD FAILED
C:\Users\henry\GitRepos\mm2\micro-manager\buildscripts\javabuild.xml:112: C:\Users\henry\GitRepos\mm2\micro-manager\build\Java\libraries does not exist.
Total time: 0 seconds
C:\Users\henry\GitRepos\mm2\micro-manager\plugins\SequenceBufferMonitor>