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R-Heatmap-Functions

Altered by Mik Black and Tom Kelly at the University of Otago

Modifications to the R function heatmap.2 {gplots}

requires R packages gplots and gtools

heatmap.mik: enable multiple colorbars for ColSideColors with rbind, rownames are labels

heatmap.mik2: enable multiple colorbars for ColSideColors with rbind, rownames are labels, and enable multiple colorbars for RowSideColors with cbind, colnames are labels

heatmap.mik.mod: heatmap.mik with column reordering supressed if a dendrogram is given for Colv, allows manual reordering of input matrix, dendrogram, and ColSideColors for custom dendrograms

heatmap.mik.mod2: functionality of heatmap.mik2 with supression of column reordering as above heatmap.mik.mod2x: functionality of heatmap.mik2 with supression of column (and row) reordering as above

heatmap.mik.tk: heatmap.mik (multiple colour bars enabled) with label editing restored from heatmap.2

heatmap.mik.tk2: heatmap.mik2 (multiple and row colour bars enabled) with label editing restored from heatmap.2

heatmap.mik.tk3: heatmap.mik2 (multiple and row colour bars enabled) with label editing restored from heatmap.2 and adjusting width of color bars with colbarsize (relative to default of 1).

Citation: Gregory R. Warnes, Ben Bolker, Lodewijk Bonebakker, Robert Gentleman, Wolfgang Huber Andy Liaw, Thomas Lumley, Martin Maechler, Arni Magnusson, Steffen Moeller, Marc Schwartz and Bill Venables (2015). gplots: Various R Programming Tools for Plotting Data. R package version 2.17.0. http://CRAN.R-project.org/package=gplots