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docs/source/conf.py

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# General information about the project.
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project = 'Nimfa'
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copyright = '2016, Marinka Zitnik'
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copyright = '2016, The Nimfa developers'
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# The version info for the project you're documenting, acts as replacement for
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# |version| and |release|, also used in various other places throughout the
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# The short X.Y version.
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version = '1.3'
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# The full version, including alpha/beta/rc tags.
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release = '1.3.0'
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release = '1.3.1'
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# The language for content autogenerated by Sphinx. Refer to documentation
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# for a list of supported languages.
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# (source start file, target name, title, author, documentclass [howto/manual]).
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latex_documents = [
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('index', 'nimfa-APythonLibraryforNonnegativeMatrixFactorization.tex', 'nimfa - A Python Library for Nonnegative Matrix Factorization',
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'Marinka Zitnik', 'manual'),
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'The Nimfa developers', 'manual'),
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]
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# The name of an image file (relative to this directory) to place at the top of

docs/source/index.rst

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`Nimfa`_ is a Python library for nonnegative matrix factorization. It includes implementations of several factorization methods, initialization approaches, and quality scoring.
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Both dense and sparse matrix representation are supported.
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Nimfa is distributed under the BSD license.
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****
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The sample script using Nimfa on medulloblastoma gene expression data is given below. It uses alternating least squares nonnegative matrix
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factorization with projected gradient method for subproblems [Lin2007]_ and Random Vcol [Albright2006]_ initialization algorithm. An object returned by ``nimfa.mf_run`` is
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fitted factorization model through which user can access matrix factors and estimate quality measures.
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This software and data is provided as-is, and there are no guarantees
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that it fits your purposes or that it is bug-free. Use it at your own
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risk!
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#######
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License
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#######
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Nimfa - A Python Library for Nonnegative Matrix Factorization
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Copyright (C) 2011-2016
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This program is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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################
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Index and Search
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################
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* :ref:`genindex`
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* :ref:`modindex`
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* :ref:`search`
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risk!

nimfa/__init__.py

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"""
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__license__ = 'BSD'
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__version__ = '1.3.0'
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__version__ = '1.3.1'
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__maintainer__ = 'Marinka Zitnik'
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__email__ = '[email protected]'
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setup.py

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KEYWORDS = ['matrix factorization', 'nonnegative matrix factorization',
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'bioinformatics', 'data mining', 'machine learning']
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LICENSE = 'BSD'
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VERSION = '1.3.0'
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VERSION = '1.3.1'
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ISRELEASED = True
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INSTALL_REQUIRES = (

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