Dockerfile.pipe

FROM pytorch/pytorch:1.7.1-cuda11.0-cudnn8-runtime

LABEL org.opencontainers.image.source https://github.com/mood-mapping-muppets/repo

RUN apt-get update && \
    DEBIAN_FRONTEND=noninteractive apt-get install -yq \
      zstd xz-utils git build-essential wget bash coreutils \
      python3 python3-dev python3-pip \
      r-base r-base-dev && \
    rm -rf /var/lib/apt/lists/*

RUN python3 -m pip install --upgrade \
    pip==20.2.4 \
    setuptools==50.3.2 \
    poetry==1.1.4 \
    poetry-core==1.0.0

WORKDIR /opt/coviddash

COPY pyproject.toml poetry.lock install_rest.sh ./

RUN poetry export -E usenews \
      --without-hashes > requirements.txt && \
    sed -i '/pytorch/d' requirements.txt && \
    sed -i '/PyYAML/d' requirements.txt && \
    python3 -m pip install -r requirements.txt && \
    rm requirements.txt && \
    ./install_rest.sh && \
    rm -rf /root/.cache

# First copy only bare minimum to run setup_image
COPY workflow/ ./workflow/
RUN mkdir -p analysis && \
    touch analysis/__init__.py
COPY analysis/sentiment_antonym_pair_util.py ./analysis/sentiment_antonym_pair_util.py

RUN mkdir -p /opt/nltk_data
ENV NLTK_DATA=/opt/nltk_data

RUN snakemake --cores 1 fetch_nltk_resources

COPY ingress ./ingress/
COPY analysis/ ./analysis/
COPY mmmbgknow/ ./mmmbgknow/
COPY database/ ./database/

RUN echo "/opt/coviddash" > \
    /opt/conda/lib/python3.8/site-packages/coviddash.pth