Add conda environment with all packages

Author: mortenterhart

conda_env.yml

@@ -0,0 +1,347 @@
+name: kg_thesis
+channels:
+  - pytorch
+  - nvidia
+  - conda-forge
+dependencies:
+  - _libgcc_mutex=0.1=conda_forge
+  - _openmp_mutex=4.5=2_kmp_llvm
+  - alsa-lib=1.2.8=h166bdaf_0
+  - anyio=4.2.0=pyhd8ed1ab_0
+  - argon2-cffi=23.1.0=pyhd8ed1ab_0
+  - argon2-cffi-bindings=21.2.0=py310h2372a71_4
+  - arrow=1.3.0=pyhd8ed1ab_0
+  - asttokens=2.4.1=pyhd8ed1ab_0
+  - async-lru=2.0.4=pyhd8ed1ab_0
+  - attr=2.5.1=h166bdaf_1
+  - attrs=23.2.0=pyh71513ae_0
+  - babel=2.14.0=pyhd8ed1ab_0
+  - beautifulsoup4=4.12.3=pyha770c72_0
+  - blas=2.116=mkl
+  - blas-devel=3.9.0=16_linux64_mkl
+  - bleach=6.1.0=pyhd8ed1ab_0
+  - brotli=1.1.0=hd590300_1
+  - brotli-bin=1.1.0=hd590300_1
+  - brotli-python=1.1.0=py310hc6cd4ac_1
+  - bzip2=1.0.8=hd590300_5
+  - ca-certificates=2023.11.17=hbcca054_0
+  - cached-property=1.5.2=hd8ed1ab_1
+  - cached_property=1.5.2=pyha770c72_1
+  - cairo=1.16.0=ha61ee94_1014
+  - certifi=2023.11.17=pyhd8ed1ab_0
+  - cffi=1.16.0=py310h2fee648_0
+  - charset-normalizer=3.3.2=pyhd8ed1ab_0
+  - comm=0.2.1=pyhd8ed1ab_0
+  - contourpy=1.2.0=py310hd41b1e2_0
+  - cuda-cudart=12.1.105=0
+  - cuda-cupti=12.1.105=0
+  - cuda-libraries=12.1.0=0
+  - cuda-nvrtc=12.1.105=0
+  - cuda-nvtx=12.1.105=0
+  - cuda-opencl=12.3.101=0
+  - cuda-runtime=12.1.0=0
+  - cycler=0.12.1=pyhd8ed1ab_0
+  - dbus=1.13.6=h5008d03_3
+  - debugpy=1.8.0=py310hc6cd4ac_1
+  - decorator=5.1.1=pyhd8ed1ab_0
+  - defusedxml=0.7.1=pyhd8ed1ab_0
+  - entrypoints=0.4=pyhd8ed1ab_0
+  - exceptiongroup=1.2.0=pyhd8ed1ab_0
+  - executing=2.0.1=pyhd8ed1ab_0
+  - expat=2.5.0=hcb278e6_1
+  - ffmpeg=4.3=hf484d3e_0
+  - fftw=3.3.10=nompi_hc118613_108
+  - filelock=3.13.1=pyhd8ed1ab_0
+  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
+  - font-ttf-inconsolata=3.000=h77eed37_0
+  - font-ttf-source-code-pro=2.038=h77eed37_0
+  - font-ttf-ubuntu=0.83=h77eed37_1
+  - fontconfig=2.14.2=h14ed4e7_0
+  - fonts-conda-ecosystem=1=0
+  - fonts-conda-forge=1=0
+  - fonttools=4.47.0=py310h2372a71_0
+  - fqdn=1.5.1=pyhd8ed1ab_0
+  - freetype=2.12.1=h267a509_2
+  - gettext=0.21.1=h27087fc_0
+  - glib=2.78.3=hfc55251_0
+  - glib-tools=2.78.3=hfc55251_0
+  - gmp=6.3.0=h59595ed_0
+  - gmpy2=2.1.2=py310h3ec546c_1
+  - gnutls=3.6.13=h85f3911_1
+  - graphite2=1.3.13=h58526e2_1001
+  - gst-plugins-base=1.22.0=h4243ec0_2
+  - gstreamer=1.22.0=h25f0c4b_2
+  - gstreamer-orc=0.4.34=hd590300_0
+  - harfbuzz=6.0.0=h8e241bc_0
+  - icu=70.1=h27087fc_0
+  - idna=3.6=pyhd8ed1ab_0
+  - importlib-metadata=7.0.1=pyha770c72_0
+  - importlib_metadata=7.0.1=hd8ed1ab_0
+  - importlib_resources=6.1.1=pyhd8ed1ab_0
+  - ipykernel=6.29.0=pyhd33586a_0
+  - ipython=8.19.0=pyh707e725_0
+  - ipywidgets=8.1.1=pyhd8ed1ab_0
+  - isoduration=20.11.0=pyhd8ed1ab_0
+  - jack=1.9.22=h11f4161_0
+  - jedi=0.19.1=pyhd8ed1ab_0
+  - jinja2=3.1.2=pyhd8ed1ab_1
+  - jpeg=9e=h166bdaf_2
+  - json5=0.9.14=pyhd8ed1ab_0
+  - jsonpointer=2.4=py310hff52083_3
+  - jsonschema=4.21.1=pyhd8ed1ab_0
+  - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
+  - jsonschema-with-format-nongpl=4.21.1=pyhd8ed1ab_0
+  - jupyter=1.0.0=pyhd8ed1ab_10
+  - jupyter-lsp=2.2.2=pyhd8ed1ab_0
+  - jupyter_client=8.6.0=pyhd8ed1ab_0
+  - jupyter_console=6.6.3=pyhd8ed1ab_0
+  - jupyter_core=5.7.1=py310hff52083_0
+  - jupyter_events=0.9.0=pyhd8ed1ab_0
+  - jupyter_server=2.12.5=pyhd8ed1ab_0
+  - jupyter_server_terminals=0.5.1=pyhd8ed1ab_0
+  - jupyterlab=4.0.11=pyhd8ed1ab_0
+  - jupyterlab_pygments=0.3.0=pyhd8ed1ab_0
+  - jupyterlab_server=2.25.2=pyhd8ed1ab_0
+  - jupyterlab_widgets=3.0.9=pyhd8ed1ab_0
+  - keyutils=1.6.1=h166bdaf_0
+  - kiwisolver=1.4.5=py310hd41b1e2_1
+  - krb5=1.20.1=h81ceb04_0
+  - lame=3.100=h166bdaf_1003
+  - lcms2=2.15=hfd0df8a_0
+  - ld_impl_linux-64=2.40=h41732ed_0
+  - lerc=4.0.0=h27087fc_0
+  - libblas=3.9.0=16_linux64_mkl
+  - libbrotlicommon=1.1.0=hd590300_1
+  - libbrotlidec=1.1.0=hd590300_1
+  - libbrotlienc=1.1.0=hd590300_1
+  - libcap=2.67=he9d0100_0
+  - libcblas=3.9.0=16_linux64_mkl
+  - libclang=15.0.7=default_hb11cfb5_4
+  - libclang13=15.0.7=default_ha2b6cf4_4
+  - libcublas=12.1.0.26=0
+  - libcufft=11.0.2.4=0
+  - libcufile=1.8.1.2=0
+  - libcups=2.3.3=h36d4200_3
+  - libcurand=10.3.4.107=0
+  - libcusolver=11.4.4.55=0
+  - libcusparse=12.0.2.55=0
+  - libdb=6.2.32=h9c3ff4c_0
+  - libdeflate=1.17=h0b41bf4_0
+  - libedit=3.1.20191231=he28a2e2_2
+  - libevent=2.1.10=h28343ad_4
+  - libexpat=2.5.0=hcb278e6_1
+  - libffi=3.4.2=h7f98852_5
+  - libflac=1.4.3=h59595ed_0
+  - libgcc-ng=13.2.0=h807b86a_3
+  - libgcrypt=1.10.3=hd590300_0
+  - libgfortran-ng=13.2.0=h69a702a_3
+  - libgfortran5=13.2.0=ha4646dd_3
+  - libglib=2.78.3=h783c2da_0
+  - libgomp=13.2.0=h807b86a_3
+  - libgpg-error=1.47=h71f35ed_0
+  - libhwloc=2.9.1=hd6dc26d_0
+  - libiconv=1.17=hd590300_2
+  - libjpeg-turbo=2.0.0=h9bf148f_0
+  - liblapack=3.9.0=16_linux64_mkl
+  - liblapacke=3.9.0=16_linux64_mkl
+  - libllvm15=15.0.7=hadd5161_1
+  - libnpp=12.0.2.50=0
+  - libnsl=2.0.1=hd590300_0
+  - libnvjitlink=12.1.105=0
+  - libnvjpeg=12.1.1.14=0
+  - libogg=1.3.4=h7f98852_1
+  - libopus=1.3.1=h7f98852_1
+  - libpng=1.6.39=h753d276_0
+  - libpq=15.3=hbcd7760_1
+  - libsndfile=1.2.2=hc60ed4a_1
+  - libsodium=1.0.18=h36c2ea0_1
+  - libsqlite=3.44.2=h2797004_0
+  - libstdcxx-ng=13.2.0=h7e041cc_3
+  - libsystemd0=253=h8c4010b_1
+  - libtiff=4.5.0=h6adf6a1_2
+  - libtool=2.4.7=h27087fc_0
+  - libudev1=253=h0b41bf4_1
+  - libuuid=2.38.1=h0b41bf4_0
+  - libvorbis=1.3.7=h9c3ff4c_0
+  - libwebp-base=1.3.2=hd590300_0
+  - libxcb=1.13=h7f98852_1004
+  - libxcrypt=4.4.36=hd590300_1
+  - libxkbcommon=1.5.0=h79f4944_1
+  - libxml2=2.10.3=hca2bb57_4
+  - libzlib=1.2.13=hd590300_5
+  - llvm-openmp=15.0.7=h0cdce71_0
+  - lz4-c=1.9.4=hcb278e6_0
+  - markupsafe=2.1.3=py310h2372a71_1
+  - matplotlib=3.8.2=py310hff52083_0
+  - matplotlib-base=3.8.2=py310h62c0568_0
+  - matplotlib-inline=0.1.6=pyhd8ed1ab_0
+  - mistune=3.0.2=pyhd8ed1ab_0
+  - mkl=2022.1.0=h84fe81f_915
+  - mkl-devel=2022.1.0=ha770c72_916
+  - mkl-include=2022.1.0=h84fe81f_915
+  - mpc=1.3.1=hfe3b2da_0
+  - mpfr=4.2.1=h9458935_0
+  - mpg123=1.32.3=h59595ed_0
+  - mpmath=1.3.0=pyhd8ed1ab_0
+  - munkres=1.1.4=pyh9f0ad1d_0
+  - mysql-common=8.0.33=hf1915f5_6
+  - mysql-libs=8.0.33=hca2cd23_6
+  - nbclient=0.8.0=pyhd8ed1ab_0
+  - nbconvert=7.14.2=pyhd8ed1ab_0
+  - nbconvert-core=7.14.2=pyhd8ed1ab_0
+  - nbconvert-pandoc=7.14.2=pyhd8ed1ab_0
+  - nbformat=5.9.2=pyhd8ed1ab_0
+  - ncurses=6.4=h59595ed_2
+  - nest-asyncio=1.6.0=pyhd8ed1ab_0
+  - nettle=3.6=he412f7d_0
+  - networkx=3.2.1=pyhd8ed1ab_0
+  - notebook=7.0.7=pyhd8ed1ab_0
+  - notebook-shim=0.2.3=pyhd8ed1ab_0
+  - nspr=4.35=h27087fc_0
+  - nss=3.96=h1d7d5a4_0
+  - numpy=1.26.3=py310hb13e2d6_0
+  - openh264=2.1.1=h780b84a_0
+  - openjpeg=2.5.0=hfec8fc6_2
+  - openssl=3.1.4=hd590300_0
+  - overrides=7.6.0=pyhd8ed1ab_0
+  - packaging=23.2=pyhd8ed1ab_0
+  - pandas=2.1.4=py310hcc13569_0
+  - pandoc=3.1.3=h32600fe_0
+  - pandocfilters=1.5.0=pyhd8ed1ab_0
+  - parso=0.8.3=pyhd8ed1ab_0
+  - patsy=0.5.6=pyhd8ed1ab_0
+  - pcre2=10.42=hcad00b1_0
+  - pexpect=4.8.0=pyh1a96a4e_2
+  - pickleshare=0.7.5=py_1003
+  - pillow=9.4.0=py310h023d228_1
+  - pip=23.3.2=pyhd8ed1ab_0
+  - pixman=0.42.2=h59595ed_0
+  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
+  - platformdirs=4.1.0=pyhd8ed1ab_0
+  - ply=3.11=py_1
+  - prometheus_client=0.19.0=pyhd8ed1ab_0
+  - prompt-toolkit=3.0.42=pyha770c72_0
+  - prompt_toolkit=3.0.42=hd8ed1ab_0
+  - pthread-stubs=0.4=h36c2ea0_1001
+  - ptyprocess=0.7.0=pyhd3deb0d_0
+  - pulseaudio=16.1=hcb278e6_3
+  - pulseaudio-client=16.1=h5195f5e_3
+  - pulseaudio-daemon=16.1=ha8d29e2_3
+  - pure_eval=0.2.2=pyhd8ed1ab_0
+  - pycparser=2.21=pyhd8ed1ab_0
+  - pygments=2.17.2=pyhd8ed1ab_0
+  - pyparsing=3.1.1=pyhd8ed1ab_0
+  - pyqt=5.15.9=py310h04931ad_5
+  - pyqt5-sip=12.12.2=py310hc6cd4ac_5
+  - pysocks=1.7.1=pyha2e5f31_6
+  - python=3.10.13=hd12c33a_0_cpython
+  - python-dateutil=2.8.2=pyhd8ed1ab_0
+  - python-fastjsonschema=2.19.1=pyhd8ed1ab_0
+  - python-json-logger=2.0.7=pyhd8ed1ab_0
+  - python-tzdata=2023.4=pyhd8ed1ab_0
+  - python_abi=3.10=4_cp310
+  - pytorch=2.1.2=py3.10_cuda12.1_cudnn8.9.2_0
+  - pytorch-cuda=12.1=ha16c6d3_5
+  - pytorch-mutex=1.0=cuda
+  - pytz=2023.3.post1=pyhd8ed1ab_0
+  - pyyaml=6.0.1=py310h2372a71_1
+  - pyzmq=25.1.2=py310h795f18f_0
+  - qt-main=5.15.8=h5d23da1_6
+  - qtconsole-base=5.5.1=pyha770c72_0
+  - qtpy=2.4.1=pyhd8ed1ab_0
+  - readline=8.2=h8228510_1
+  - referencing=0.32.1=pyhd8ed1ab_0
+  - requests=2.31.0=pyhd8ed1ab_0
+  - rfc3339-validator=0.1.4=pyhd8ed1ab_0
+  - rfc3986-validator=0.1.1=pyh9f0ad1d_0
+  - rpds-py=0.17.1=py310hcb5633a_0
+  - scipy=1.11.4=py310hb13e2d6_0
+  - seaborn=0.13.1=hd8ed1ab_0
+  - seaborn-base=0.13.1=pyhd8ed1ab_0
+  - send2trash=1.8.2=pyh41d4057_0
+  - setuptools=69.0.3=pyhd8ed1ab_0
+  - sip=6.7.12=py310hc6cd4ac_0
+  - six=1.16.0=pyh6c4a22f_0
+  - sniffio=1.3.0=pyhd8ed1ab_0
+  - soupsieve=2.5=pyhd8ed1ab_1
+  - stack_data=0.6.2=pyhd8ed1ab_0
+  - statsmodels=0.14.1=py310h1f7b6fc_0
+  - sympy=1.12=pypyh9d50eac_103
+  - tbb=2021.9.0=hf52228f_0
+  - terminado=0.18.0=pyh0d859eb_0
+  - tinycss2=1.2.1=pyhd8ed1ab_0
+  - tk=8.6.13=noxft_h4845f30_101
+  - toml=0.10.2=pyhd8ed1ab_0
+  - tomli=2.0.1=pyhd8ed1ab_0
+  - torchaudio=2.1.2=py310_cu121
+  - torchtriton=2.1.0=py310
+  - torchvision=0.16.2=py310_cu121
+  - tornado=6.3.3=py310h2372a71_1
+  - traitlets=5.14.1=pyhd8ed1ab_0
+  - types-python-dateutil=2.8.19.20240106=pyhd8ed1ab_0
+  - typing-extensions=4.9.0=hd8ed1ab_0
+  - typing_extensions=4.9.0=pyha770c72_0
+  - typing_utils=0.1.0=pyhd8ed1ab_0
+  - tzdata=2023d=h0c530f3_0
+  - unicodedata2=15.1.0=py310h2372a71_0
+  - uri-template=1.3.0=pyhd8ed1ab_0
+  - urllib3=2.1.0=pyhd8ed1ab_0
+  - wcwidth=0.2.12=pyhd8ed1ab_0
+  - webcolors=1.13=pyhd8ed1ab_0
+  - webencodings=0.5.1=pyhd8ed1ab_2
+  - websocket-client=1.7.0=pyhd8ed1ab_0
+  - wheel=0.42.0=pyhd8ed1ab_0
+  - widgetsnbextension=4.0.9=pyhd8ed1ab_0
+  - xcb-util=0.4.0=h516909a_0
+  - xcb-util-image=0.4.0=h166bdaf_0
+  - xcb-util-keysyms=0.4.0=h516909a_0
+  - xcb-util-renderutil=0.3.9=h166bdaf_0
+  - xcb-util-wm=0.4.1=h516909a_0
+  - xkeyboard-config=2.38=h0b41bf4_0
+  - xorg-kbproto=1.0.7=h7f98852_1002
+  - xorg-libice=1.1.1=hd590300_0
+  - xorg-libsm=1.2.4=h7391055_0
+  - xorg-libx11=1.8.4=h0b41bf4_0
+  - xorg-libxau=1.0.11=hd590300_0
+  - xorg-libxdmcp=1.1.3=h7f98852_0
+  - xorg-libxext=1.3.4=h0b41bf4_2
+  - xorg-libxrender=0.9.10=h7f98852_1003
+  - xorg-renderproto=0.11.1=h7f98852_1002
+  - xorg-xextproto=7.3.0=h0b41bf4_1003
+  - xorg-xproto=7.0.31=h7f98852_1007
+  - xz=5.2.6=h166bdaf_0
+  - yaml=0.2.5=h7f98852_2
+  - zeromq=4.3.5=h59595ed_0
+  - zipp=3.17.0=pyhd8ed1ab_0
+  - zlib=1.2.13=hd590300_5
+  - zstd=1.5.5=hfc55251_0
+  - pip:
+      - alembic==1.13.1
+      - class-resolver==0.4.2
+      - click==8.1.7
+      - click-default-group==1.2.4
+      - colorlog==6.8.0
+      - dataclasses-json==0.6.3
+      - docdata==0.0.3
+      - fsspec==2023.12.2
+      - greenlet==3.0.3
+      - joblib==1.3.2
+      - mako==1.3.0
+      - marshmallow==3.20.1
+      - more-click==0.1.2
+      - more-itertools==10.1.0
+      - mypy-extensions==1.0.0
+      - optuna==3.5.0
+      - protobuf==3.20.3
+      - psutil==5.9.7
+      - pykeen==1.10.1
+      - pystow==0.5.2
+      - rexmex==0.1.3
+      - scikit-learn==1.3.2
+      - sqlalchemy==2.0.25
+      - tabulate==0.9.0
+      - threadpoolctl==3.2.0
+      - torch-max-mem==0.1.3
+      - torch-ppr==0.0.8
+      - typing-inspect==0.9.0
+prefix: /home/mte/.mambaforge/envs/kg_thesis