Debug for scripted call

Author: oceancolorcoder

Config/sample_SEABIRD_pySAS.cfg

@@ -152,7 +152,6 @@
     "seaBASSHeaderFileName": "sample_SEABIRD_pySAS.hdr",
     "bL2SaveSeaBASS": 1,
     "bL2WriteReport": 1,
-    "bL2filterMetFlags": 0,
     "bL2Prodoc3m": 1,
     "bL2Prodkd490": 0,
     "bL2Prodpic": 0,

Config/sample_SEABIRD_pySAS.hdr

@@ -34,7 +34,7 @@
     "rho_correction": "M99",
     "NIR_residual_correction": "R06",
     "BRDF_correction": "L11",
-    "comments": "! HyperInSPACE vers = 1.2.13\n! HyperInSPACE Config = sample_SEABIRD_pySAS.cfg\n! Rotator Home Angle = 0.0\n! Rotator Delay = 2.0\n! Pitch/Roll Filter = On\n! Max Pitch/Roll = 5.0\n! Rotator Min/Max Filter = On\n! Rotator Min = -126.0\n! Rotator Max = 42.0\n! Rel Azimuth Filter = On\n! Rel Azimuth Min = 90.0\n! Rel Azimuth Max = 135.0\n! Deglitch Filter = On\n! ES Dark Window = 11\n! ES Light Window = 5\n! ES Dark Sigma = 3.2\n! ES Light Sigma = 2.3\n! LI Dark Window = 11\n! LI Light Window = 5\n! LI Dark Sigma = 3.3\n! LI Light Sigma = 3.0\n! LT Dark Window = 11\n! LT Light Window = 13\n! LT Dark Sigma = 3.2\n! LT Light Sigma = 2.7\n! FRM Pathway = FRM-Full-Characterization\n! Wavelength Interp Int = 3.3\n! Max Wind = 10.0\n! Min SZA = 20.0\n! Max SZA = 60.0\n! Spectral Filter = On\n! Filter Sigma Es = 5.0\n! Filter Sigma Li = 8.0\n! Filter Sigma Lt = 3.0\n! Meteorological Filter = On\n! Cloud Flag = 1.0\n! Es Flag = 2.0\n! Dawn/Dusk Flag = 1.0\n! Rain/Humidity Flag = 1.095\n! Ensemble Interval = 300\n! Percent Lt Filter = On\n! Percent Light = 10.0\n! Remove Negatives = On",
+    "comments": "! HyperInSPACE vers = 1.2.13\n! HyperInSPACE Config = /Users/daurin/GitRepos/HyperCP/Config/sample_SEABIRD_pySAS.cfg\n! Rotator Home Angle = 0.0\n! Rotator Delay = 2.0\n! Pitch/Roll Filter = On\n! Max Pitch/Roll = 5.0\n! Rotator Min/Max Filter = On\n! Rotator Min = -126.0\n! Rotator Max = 42.0\n! Rel Azimuth Filter = On\n! Rel Azimuth Min = 90.0\n! Rel Azimuth Max = 135.0\n! Deglitch Filter = On\n! ES Dark Window = 11\n! ES Light Window = 5\n! ES Dark Sigma = 3.2\n! ES Light Sigma = 2.3\n! LI Dark Window = 11\n! LI Light Window = 5\n! LI Dark Sigma = 3.3\n! LI Light Sigma = 3.0\n! LT Dark Window = 11\n! LT Light Window = 13\n! LT Dark Sigma = 3.2\n! LT Light Sigma = 2.7\n! FRM Pathway = FRM-Full-Characterization\n! Wavelength Interp Int = 3.3\n! Max Wind = 10.0\n! Min SZA = 20.0\n! Max SZA = 60.0\n! Spectral Filter = On\n! Filter Sigma Es = 5.0\n! Filter Sigma Li = 8.0\n! Filter Sigma Lt = 3.0\n! Meteorological Filter = On\n! Cloud Flag = 1.0\n! Es Flag = 2.0\n! Dawn/Dusk Flag = 1.0\n! Rain/Humidity Flag = 1.095\n! Ensemble Interval = 300\n! Percent Lt Filter = On\n! Percent Light = 10.0\n! Remove Negatives = On",
     "other_comments": "!\n! COMMENTS\n!\n! FRM4SOC-2 Field InterComparison Experiment (FICE)\n! July 11 - 21, 2022\n! Acqua Alta Oceanographic Tower (AAOT), CNR-ISMAR\n!\n! Ancillary data from: % https://www.comune.venezia.it/content/3-piattaforma-ISMAR-CNR\n! and field notes. relAz refers to target relative azimuth in pySAS.\n!\n! Home",
     "missing": -9999,
     "delimiter": "comma"

Config/sample_TRIOS_NOTRACKER.hdr

@@ -34,7 +34,7 @@
     "rho_correction": "M99",
     "NIR_residual_correction": "R06",
     "BRDF_correction": "NoBRDF",
-    "comments": "! HyperInSPACE vers = 1.2.11\n! HyperInSPACE Config = sample_TRIOS_NOTRACKER.cfg\n! Rotator Home Angle = 0.0\n! Rotator Delay = 2.0\n! Pitch/Roll Filter = Off\n! Max Pitch/Roll = 5.0\n! Rotator Min/Max Filter = Off\n! Rotator Min = -40.0\n! Rotator Max = 40.0\n! Rel Azimuth Filter = On\n! Rel Azimuth Min = 90.0\n! Rel Azimuth Max = 135.0\n! Deglitch Filter = Off\n! ES Dark Window = 11\n! ES Light Window = 5\n! ES Dark Sigma = 3.2\n! ES Light Sigma = 2.3\n! LI Dark Window = 11\n! LI Light Window = 5\n! LI Dark Sigma = 3.3\n! LI Light Sigma = 3.0\n! LT Dark Window = 11\n! LT Light Window = 13\n! LT Dark Sigma = 3.2\n! LT Light Sigma = 2.7\n! FRM Pathway = FRM-Full-Characterization\n! Wavelength Interp Int = 3.3\n! Max Wind = 10.0\n! Min SZA = 20.0\n! Max SZA = 60.0\n! Spectral Filter = On\n! Filter Sigma Es = 5.0\n! Filter Sigma Li = 8.0\n! Filter Sigma Lt = 3.0\n! Meteorological Filter = On\n! Cloud Flag = 1.0\n! Es Flag = 2.0\n! Dawn/Dusk Flag = 1.0\n! Rain/Humidity Flag = 1.095\n! Ensemble Interval = 300\n! Percent Lt Filter = On\n! Percent Light = 10.0\n! Remove Negatives = On",
+    "comments": "! HyperInSPACE vers = 1.2.13\n! HyperInSPACE Config = /Users/daurin/GitRepos/HyperCP/Config/sample_TriOS_NOTRACKER.cfg\n! Rotator Home Angle = 0.0\n! Rotator Delay = 2.0\n! Pitch/Roll Filter = Off\n! Max Pitch/Roll = 5.0\n! Rotator Min/Max Filter = Off\n! Rotator Min = -40.0\n! Rotator Max = 40.0\n! Rel Azimuth Filter = On\n! Rel Azimuth Min = 90.0\n! Rel Azimuth Max = 135.0\n! Deglitch Filter = Off\n! ES Dark Window = 11\n! ES Light Window = 5\n! ES Dark Sigma = 3.2\n! ES Light Sigma = 2.3\n! LI Dark Window = 11\n! LI Light Window = 5\n! LI Dark Sigma = 3.3\n! LI Light Sigma = 3.0\n! LT Dark Window = 11\n! LT Light Window = 13\n! LT Dark Sigma = 3.2\n! LT Light Sigma = 2.7\n! FRM Pathway = FRM-Full-Characterization\n! Wavelength Interp Int = 3.3\n! Max Wind = 10.0\n! Min SZA = 20.0\n! Max SZA = 60.0\n! Spectral Filter = On\n! Filter Sigma Es = 5.0\n! Filter Sigma Li = 8.0\n! Filter Sigma Lt = 3.0\n! Meteorological Filter = On\n! Cloud Flag = 1.0\n! Es Flag = 2.0\n! Dawn/Dusk Flag = 1.0\n! Rain/Humidity Flag = 1.095\n! Ensemble Interval = 300\n! Percent Lt Filter = On\n! Percent Light = 10.0\n! Remove Negatives = On",
     "other_comments": "!\n! Sample dataset for TriOS triplet with no GPS or sun tracker.\n! FRM4SOC-2 Field InterComparison Experiment (FICE)\n! July 11 - 21, 2022\n! Acqua Alta Oceanographic Tower (AAOT), CNR-ISMAR\n! \n! RelAz refer to solar-sensor relative azimuth angle.\n! Manually operated TriOS triplet. Height: ~15 m, Tower color: Red/yellow.\n!",
     "missing": -9999,
     "delimiter": "comma"

Main.py

@@ -686,12 +686,14 @@ def __init__(
         # Now make it a list as it is expected to be
         # inputFile = [inputFile]
 
+        ConfigFile.loadConfig(self.configFilename)
+        
         # No GUI used: error message are display in prompt and not in graphical window
         MainConfig.settings["popQuery"] = 1 # 1 suppresses popup
         MainConfig.saveConfig(MainConfig.fileName)
         print("MainConfig - Config updated with cmd line arguments")
 
-        ConfigFile.loadConfig(self.configFilename)
+        
 
         calFiles = ConfigFile.settings["CalibrationFiles"]
 

README.md

@@ -34,7 +34,7 @@ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLI
 
 **Main author**: Dirk Aurin, MSU @ NASA Goddard Space Flight Center <[email protected]>
 
-**Co-authors**: Nathan Vandenberg @ UVictoria, Maycira Costa @ UVictoria (in the frame of [PySciDON](https://ieeexplore.ieee.org/abstract/document/8121926)), Alexis Deru @ ACRI-ST, Ashley Ramsay @ NPL, Agnieszka Bialek @ NPL, Marine Bretagnon @ ACRI-ST (in the frame of Copernicus' [FRM4SOC-2](https://frm4soc2.eumetsat.int/)), Gabriele Bai @ ACRI-ST, Juan Ignacio Gossn @ EUMETSAT, Nils Haentjens @ UMaine
+**Co-authors**: Nathan Vandenberg @ UVictoria (in the frame of [PySciDON](https://ieeexplore.ieee.org/abstract/document/8121926)), Ashley Ramsay @ NPL, Juan Ignacio Gossn @ EUMETSAT, Nils Haentjens @ UMaine, Agnieszka Bialek @ NPL, Alexis Deru @ ACRI-ST, Heng Gu @ NOAA, Mohamed Abdelmegid @ NOAA, Raphael Mabit @ UQuebec, Maycira Costa @ UVictoria, Marine Bretagnon @ ACRI-ST, Gabriele Bai @ ACRI-ST
 
 **Contact**: Discussions tab in GitHub, or Dirk Aurin, MSU @ NASA Goddard Space Flight Center <[email protected]>, and Juan Ignacio Gossn @ EUMETSAT <[email protected]>
 

run_Sample_Data.py

@@ -29,16 +29,16 @@
 
 ################################################### CUSTOM SET UP ###################################################
 # Batch options
-MULTI_TASK = True  # Multiple threads for HyperSAS (any level) or TriOS (only L1A and up)
+MULTI_TASK = False  # Multiple threads for HyperSAS (any level) or TriOS (only L1A and up)
 MULTI_LEVEL = False  # Process raw (L0) to Level-2 (L2)
 CLOBBER = True      # True overwrites existing files
 PROC_LEVEL = "L1A"   # Process to this level: L1A, L1AQC, L1B, LBQC, L2 (ignored for MULTI_LEVEL)
 
 # Dataset options
-# PLATFORM = "pySAS"
-PLATFORM = "Manual_TriOS"
-# INST_TYPE = "SEABIRD"  # SEABIRD or TRIOS; defines raw file naming
-INST_TYPE = "TRIOS"
+PLATFORM = "pySAS"
+# PLATFORM = "Manual_TriOS"
+INST_TYPE = "SEABIRD"  # SEABIRD or TRIOS; defines raw file naming
+# INST_TYPE = "TRIOS"
 CRUISE = "FICE22"
 # L1B_REGIME: Optional. [Default, Class, Full]
 #   Denote FRM processing regime and use appropriately named subdirectories.