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report.bib
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@article{1,
author = {Gilles Louppe and Kyle Cranmer and Juan Pavez},
title = {carl: a likelihood-free inference toolbox},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {11},
doi = {10.21105/joss.00011},
url = {https://joss.theoj.org/papers/joss.00011/10.21105/joss.00011},
}
@article{2,
author = {Jake VanderPlas},
title = {mst_clustering: Clustering via Euclidean Minimum Spanning Trees},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {12},
doi = {10.21105/joss.00012},
url = {https://joss.theoj.org/papers/joss.00012/10.21105/joss.00012},
}
@article{3,
author = {Alice Harpole and Ian Hawke},
title = {R3D2: Relativistic Reactive Riemann problem solver for Deflagrations and Detonations},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {16},
doi = {10.21105/joss.00016},
url = {https://joss.theoj.org/papers/joss.00016/10.21105/joss.00016},
}
@article{4,
author = {Zhao Zhang and Daniel S. Katz and Andre Merzky and Matteo Turilli and Shantenu Jha and Yadu Nand},
title = {Application Skeleton: Generating Synthetic Applications for Infrastructure Research},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {17},
doi = {10.21105/joss.00017},
url = {https://joss.theoj.org/papers/joss.00017/10.21105/joss.00017},
}
@article{5,
author = {Matthew J. Wakefield},
title = {Xenomapper: Mapping reads in a mixed species context},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {18},
doi = {10.21105/joss.00018},
url = {https://joss.theoj.org/papers/joss.00018/10.21105/joss.00018},
}
@article{6,
author = {Peter F Hickey},
title = {Representation and Manipulation of Genomic Tuples in R},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {20},
doi = {10.21105/joss.00020},
url = {https://joss.theoj.org/papers/joss.00020/10.21105/joss.00020},
}
@article{7,
author = {J. K. Tauber},
title = {pyuca: a Python implementation of the Unicode Collation Algorithm},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {21},
doi = {10.21105/joss.00021},
url = {https://joss.theoj.org/papers/joss.00021/10.21105/joss.00021},
}
@article{8,
author = {James P Balhoff},
title = {Scowl: a Scala DSL for programming with the OWL API},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {23},
doi = {10.21105/joss.00023},
url = {https://joss.theoj.org/papers/joss.00023/10.21105/joss.00023},
}
@article{9,
author = {Daniel Foreman-Mackey},
title = {corner.py: Scatterplot matrices in Python},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {24},
doi = {10.21105/joss.00024},
url = {https://joss.theoj.org/papers/joss.00024/10.21105/joss.00024},
}
@article{10,
author = {Zachary Sloan and Danny Arends and Karl W. Broman and Arthur Centeno and Nicholas Furlotte and Harm Nijveen and Lei Yan and Xiang Zhou and Robert W. Williams and Pjotr Prins},
title = {GeneNetwork: framework for web-based genetics},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {25},
doi = {10.21105/joss.00025},
url = {https://joss.theoj.org/papers/joss.00025/10.21105/joss.00025},
}
@article{11,
author = {Conrad Sanderson and Ryan Curtin},
title = {Armadillo: a template-based C++ library for linear algebra},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {26},
doi = {10.21105/joss.00026},
url = {https://joss.theoj.org/papers/joss.00026/10.21105/joss.00026},
}
@article{12,
author = {C. Titus Brown and Luiz Irber},
title = {sourmash: a library for MinHash sketching of DNA},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {27},
doi = {10.21105/joss.00027},
url = {https://joss.theoj.org/papers/joss.00027/10.21105/joss.00027},
}
@article{13,
author = {Simon J. Greenhill},
title = {Phylogemetric: A Python library for calculating phylogenetic network metrics},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {28},
doi = {10.21105/joss.00028},
url = {https://joss.theoj.org/papers/joss.00028/10.21105/joss.00028},
}
@article{14,
author = {Christian T. Jacobs and Alexandros Avdis},
title = {Git-RDM: A research data management plugin for the Git version control system},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {29},
doi = {10.21105/joss.00029},
url = {https://joss.theoj.org/papers/joss.00029/10.21105/joss.00029},
}
@article{15,
author = {Christopher R Madan},
title = {Prism: Multiple spline regression with regularization, dimensionality reduction, and feature selection},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {dimensionality reduction},
number = {},
pages = {31},
doi = {10.21105/joss.00031},
url = {https://joss.theoj.org/papers/joss.00031/10.21105/joss.00031},
}
@article{16,
author = {Zoran Cuckovic},
title = {Advanced viewshed analysis: a Quantum GIS plug-in for the analysis of visual landscapes},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {32},
doi = {10.21105/joss.00032},
url = {https://joss.theoj.org/papers/joss.00032/10.21105/joss.00032},
}
@article{17,
author = {Nitin Madnani and Anastassia Loukina},
title = {RSMTool: collection of tools building and evaluating automated scoring models},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {33},
doi = {10.21105/joss.00033},
url = {https://joss.theoj.org/papers/joss.00033/10.21105/joss.00033},
}
@article{18,
author = {Robert T. McGibbon and Carlos X. Hernández and Matthew P. Harrigan and Steven Kearnes and Mohammad M. Sultan and Stanislaw Jastrzebski and Brooke E. Husic and Vijay S. Pande},
title = {Osprey: Hyperparameter Optimization for Machine Learning},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {34},
doi = {10.21105/joss.00034},
url = {https://joss.theoj.org/papers/joss.00034/10.21105/joss.00034},
}
@article{19,
author = {Eetu Mäkelä},
title = {LAS: an integrated language analysis tool for multiple languages},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {35},
doi = {10.21105/joss.00035},
url = {https://joss.theoj.org/papers/joss.00035/10.21105/joss.00035},
}
@article{20,
author = {Michael A Levy},
title = {gwdegree: Improving interpretation of geometrically-weighted degree estimates in exponential random graph models},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {36},
doi = {10.21105/joss.00036},
url = {https://joss.theoj.org/papers/joss.00036/10.21105/joss.00036},
}
@article{21,
author = {Julia Silge and David Robinson},
title = {tidytext: Text Mining and Analysis Using Tidy Data Principles in R},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {37},
doi = {10.21105/joss.00037},
url = {https://joss.theoj.org/papers/joss.00037/10.21105/joss.00037},
}
@article{22,
author = {Matt Germonprez and Thomas Gurney and Sai Uday Shankar Korlimarla and Robin Gandhi},
title = {DoSOCS: A System for SPDX 2.0 Document Creation and Storage},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {38},
doi = {10.21105/joss.00038},
url = {https://joss.theoj.org/papers/joss.00038/10.21105/joss.00038},
}
@article{23,
author = {Simon Bogutzky and Jan Christoph Schrader and Nassrin Hajinejad and Barbara Grüter},
title = {PsychoPhysioCollector: A Smartphone-Based Data Collection App for Psychophysiological Research},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {40},
doi = {10.21105/joss.00040},
url = {https://joss.theoj.org/papers/joss.00040/10.21105/joss.00040},
}
@article{24,
author = {Simon Bogutzky and Phillip Marsch and Licínio Roque and Nassrin Hajinejad and Barbara Grüter},
title = {PsychoPhysioPipeline: A Processing and Analysis Pipeline for Psychophysiological Research},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {41},
doi = {10.21105/joss.00041},
url = {https://joss.theoj.org/papers/joss.00041/10.21105/joss.00041},
}
@article{25,
author = {Simon DW Frost},
title = {Gillespie.jl: Stochastic Simulation Algorithm in Julia},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {42},
doi = {10.21105/joss.00042},
url = {https://joss.theoj.org/papers/joss.00042/10.21105/joss.00042},
}
@article{26,
author = {Christopher D. Cooper and Natalia C. Clementi and Gilbert Forsyth and Lorena A. Barba},
title = {PyGBe: Python, GPUs and Boundary elements for biomolecular electrostatics},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {GPUs and Boundary elements for biomolecular electrostatics. Journal of Open Source Software},
number = {},
pages = {43},
doi = {10.21105/joss.00043},
url = {https://joss.theoj.org/papers/joss.00043/10.21105/joss.00043},
}
@article{27,
author = {Markus Raab},
title = {Elektra: universal framework to access configuration parameters},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {44},
doi = {10.21105/joss.00044},
url = {https://joss.theoj.org/papers/joss.00044/10.21105/joss.00044},
}
@article{28,
author = {Samuel Hinton},
title = {ChainConsumer},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {45},
doi = {10.21105/joss.00045},
url = {https://joss.theoj.org/papers/joss.00045/10.21105/joss.00045},
}
@article{29,
author = {Sebastian Bocquet and Faustin W. Carter},
title = {pygtc: beautiful parameter covariance plots (aka. Giant Triangle Confusograms)},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {46},
doi = {10.21105/joss.00046},
url = {https://joss.theoj.org/papers/joss.00046/10.21105/joss.00046},
}
@article{30,
author = {Nicholas M Van Horn and Aaron Beveridge},
title = {MassMine: Your Access To Data},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {50},
doi = {10.21105/joss.00050},
url = {https://joss.theoj.org/papers/joss.00050/10.21105/joss.00050},
}
@article{31,
author = {Claudia Vitolo and Andrew Russell and Allan Tucker},
title = {rdefra: Interact with the UK AIR Pollution Database from DEFRA},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {51},
doi = {10.21105/joss.00051},
url = {https://joss.theoj.org/papers/joss.00051/10.21105/joss.00051},
}
@article{32,
author = {Claudia Vitolo and Peter Wells and Martin Dobias and Wouter Buytaert},
title = {fuse: An R package for ensemble Hydrological Modelling},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {52},
doi = {10.21105/joss.00052},
url = {https://joss.theoj.org/papers/joss.00052/10.21105/joss.00052},
}
@article{33,
author = {Rodrigo V Honorato},
title = {CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {53},
doi = {10.21105/joss.00053},
url = {https://joss.theoj.org/papers/joss.00053/10.21105/joss.00053},
}
@article{34,
author = {Timothée Giraud and Nicolas Lambert},
title = {cartography: Create and Integrate Maps in your R Workflow},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {54},
doi = {10.21105/joss.00054},
url = {https://joss.theoj.org/papers/joss.00054/10.21105/joss.00054},
}
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author = {Dirk Eddelbuettel and Wush Wu},
title = {RcppCNPy: Read-Write Support for NumPy Files in R},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {55},
doi = {10.21105/joss.00055},
url = {https://joss.theoj.org/papers/joss.00055/10.21105/joss.00055},
}
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author = {Claudia Vitolo},
title = {hddtools: Hydrological Data Discovery Tools},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {56},
doi = {10.21105/joss.00056},
url = {https://joss.theoj.org/papers/joss.00056/10.21105/joss.00056},
}
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author = {Kyle Barbary},
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journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {58},
doi = {10.21105/joss.00058},
url = {https://joss.theoj.org/papers/joss.00058/10.21105/joss.00058},
}
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author = {Jonathan A Michaels and Hansjörg Scherberger},
title = {hebbRNN: A Reward-Modulated Hebbian Learning Rule for Recurrent Neural Networks},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {60},
doi = {10.21105/joss.00060},
url = {https://joss.theoj.org/papers/joss.00060/10.21105/joss.00060},
}
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author = {Andy Yu Zhu Yao and David Kane},
title = {walkr: MCMC Sampling from Non-Negative Convex Polytopes},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {61},
doi = {10.21105/joss.00061},
url = {https://joss.theoj.org/papers/joss.00061/10.21105/joss.00061},
}
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author = {Guillermo Hernández and Francisco Fernández},
title = {xpecgen: A program to calculate x-ray spectra generated in tungsten anodes},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {62},
doi = {10.21105/joss.00062},
url = {https://joss.theoj.org/papers/joss.00062/10.21105/joss.00062},
}
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author = {Carl Ganz},
title = {rintrojs: A Wrapper for the Intro.js Library},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {63},
doi = {10.21105/joss.00063},
url = {https://joss.theoj.org/papers/joss.00063/10.21105/joss.00063},
}
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author = {Kelly A. Kearney},
title = {ecopath_matlab: A Matlab-based implementation of the Ecopath food web algorithm},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {64},
doi = {10.21105/joss.00064},
url = {https://joss.theoj.org/papers/joss.00064/10.21105/joss.00064},
}
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author = {Dean Attali},
title = {ezknitr: Avoid the Typical Working Directory Pain When Using 'knitr'},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {75},
doi = {10.21105/joss.00075},
url = {https://joss.theoj.org/papers/joss.00075/10.21105/joss.00075},
}
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author = {Paul Constantine and Ryan Howard and Andrew Glaws and Zachary Grey and Paul Diaz and Leslie Fletcher},
title = {Python Active-subspaces Utility Library},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {79},
doi = {10.21105/joss.00079},
url = {https://joss.theoj.org/papers/joss.00079/10.21105/joss.00079},
}
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author = {Andrew J. Page and Sascha Steinbiss and Ben Taylor and Torsten Seemann and Jacqueline A. Keane},
title = {GFF3toEMBL: Preparing annotated assemblies for submission to EMBL},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {80},
doi = {10.21105/joss.00080},
url = {https://joss.theoj.org/papers/joss.00080/10.21105/joss.00080},
}
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author = {Christos Theodoropoulos and Nikolaos Skoulikidis and Anastasios Stamou},
title = {Habfuzz: A tool to calculate the instream hydraulic habitat suitability using fuzzy logic and fuzzy Bayesian inference},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {82},
doi = {10.21105/joss.00082},
url = {https://joss.theoj.org/papers/joss.00082/10.21105/joss.00082},
}
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author = {Manuel Holtgrewe and Dieter Beule},
title = {VCFPy: a Python 3 library with good support for both reading and writing VCF},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {85},
doi = {10.21105/joss.00085},
url = {https://joss.theoj.org/papers/joss.00085/10.21105/joss.00085},
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author = {Danny Arends and Yang Li and Gudrun A. Brockmann and Ritsert C. Jansen and Robert W. Williams and Pjotr Prins},
title = {Correlation Trait Loci (CTL) mapping: phenotype network inference subject to genotype},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {87},
doi = {10.21105/joss.00087},
url = {https://joss.theoj.org/papers/joss.00087/10.21105/joss.00087},
}
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author = {Andrew Halterman},
title = {Mordecai: Full Text Geoparsing and Event Geocoding},
journal = {Journal of Open Source Software},
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year = {2017},
volume = {2},
number = {},
pages = {91},
doi = {10.21105/joss.00091},
url = {https://joss.theoj.org/papers/joss.00091/10.21105/joss.00091},
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author = {Zachary M. Jones and Fridolin J. Linder},
title = {edarf: Exploratory Data Analysis using Random Forests},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {92},
doi = {10.21105/joss.00092},
url = {https://joss.theoj.org/papers/joss.00092/10.21105/joss.00092},
}
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author = {Julien Ponge and Yannick Loiseau and Frédéric Le Mouël and Nicolas Stouls and Philippe Charrière and Daniel Petisme and Sylvain Desgrais and Franck Verrot},
title = {Eclipse Golo},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {93},
doi = {10.21105/joss.00093},
url = {https://joss.theoj.org/papers/joss.00093/10.21105/joss.00093},
}
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author = {Jon Herman and Will Usher},
title = {SALib: An open-source Python library for Sensitivity Analysis},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {97},
doi = {10.21105/joss.00097},
url = {https://joss.theoj.org/papers/joss.00097/10.21105/joss.00097},
}
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author = {Philipp H Boersch-Supan},
title = {rucrdtw: Fast time series subsequence search in R},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {100},
doi = {10.21105/joss.00100},
url = {https://joss.theoj.org/papers/joss.00100/10.21105/joss.00100},
}
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author = {Kolby L. Weisenburger and Joseph Huehnerhoff and Emily M. Levesque and Philip Massey},
title = {acronym: An Automatic Reduction Pipeline for Astronomical Images},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {102},
doi = {10.21105/joss.00102},
url = {https://joss.theoj.org/papers/joss.00102/10.21105/joss.00102},
}
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author = {Kevin DeSimone and Ariel Rokem and Keith Schneider},
title = {popeye: a population receptive field estimation tool},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {103},
doi = {10.21105/joss.00103},
url = {https://joss.theoj.org/papers/joss.00103/10.21105/joss.00103},
}
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author = {Sean M Hughes},
title = {plater: Read, Tidy, and Display Data from Microtiter Plates},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {Tidy},
number = {},
pages = {106},
doi = {10.21105/joss.00106},
url = {https://joss.theoj.org/papers/joss.00106/10.21105/joss.00106},
}
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author = {Rémi Rampin and Fernando Chirigati and Dennis Shasha and Juliana Freire and Vicky Steeves},
title = {ReproZip: The Reproducibility Packer},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {107},
doi = {10.21105/joss.00107},
url = {https://joss.theoj.org/papers/joss.00107/10.21105/joss.00107},
}
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author = {Matthew J. Wakefield},
title = {SurvivalVolume: interactive volume threshold survival graphs},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {111},
doi = {10.21105/joss.00111},
url = {https://joss.theoj.org/papers/joss.00111/10.21105/joss.00111},
}
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author = {Rene L Warren},
title = {RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {116},
doi = {10.21105/joss.00116},
url = {https://joss.theoj.org/papers/joss.00116/10.21105/joss.00116},
}
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author = {Andrew J. Page and Ben Taylor and Jacqueline A. Keane},
title = {Multilocus sequence typing by blast from de novo assemblies against PubMLST},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {118},
doi = {10.21105/joss.00118},
url = {https://joss.theoj.org/papers/joss.00118/10.21105/joss.00118},
}
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author = {Seward Lee},
title = {finreportr: Financial Data from U.S. Securities and Exchange Commission},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {119},
doi = {10.21105/joss.00119},
url = {https://joss.theoj.org/papers/joss.00119/10.21105/joss.00119},
}
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author = {Kivan Polimis and Ariel Rokem and Bryna Hazelton},
title = {Confidence Intervals for Random Forests in Python},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {124},
doi = {10.21105/joss.00124},
url = {https://joss.theoj.org/papers/joss.00124/10.21105/joss.00124},
}
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author = {Brian McFee},
title = {resampy: efficient sample rate conversion in Python},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {125},
doi = {10.21105/joss.00125},
url = {https://joss.theoj.org/papers/joss.00125/10.21105/joss.00125},
}
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author = {Clayton Norris and Philip Schrodt and John Beieler},
title = {PETRARCH2: Another Event Coding Program},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {133},
doi = {10.21105/joss.00133},
url = {https://joss.theoj.org/papers/joss.00133/10.21105/joss.00133},
}
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author = {Michel Lang and Bernd Bischl and Dirk Surmann},
title = {batchtools: Tools for R to work on batch systems},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {135},
doi = {10.21105/joss.00135},
url = {https://joss.theoj.org/papers/joss.00135/10.21105/joss.00135},
}
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author = {Benjamin Naecker and Niru Maheswaranathan and Surya Ganguli and Stephen Baccus},
title = {Pyret: A Python package for analysis of neurophysiology data},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {137},
doi = {10.21105/joss.00137},
url = {https://joss.theoj.org/papers/joss.00137/10.21105/joss.00137},
}
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author = {Kristian Jensen and Joao G.R. Cardoso and Nikolaus Sonnenschein},
title = {Optlang: An algebraic modeling language for mathematical optimization},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {139},
doi = {10.21105/joss.00139},
url = {https://joss.theoj.org/papers/joss.00139/10.21105/joss.00139},
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author = {Bryna J. Hazelton and Daniel C. Jacobs and Jonathan C. Pober and Adam P. Beardsley},
title = {pyuvdata: an interface for astronomical interferometeric datasets in python},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {140},
doi = {10.21105/joss.00140},
url = {https://joss.theoj.org/papers/joss.00140/10.21105/joss.00140},
}
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author = {Jeff Goldsmith},
title = {vbvs.concurrent: Fitting Methods for the Functional Linear Concurrent Model},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2016},
volume = {1},
number = {},
pages = {141},
doi = {10.21105/joss.00141},
url = {https://joss.theoj.org/papers/joss.00141/10.21105/joss.00141},
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author = {Camille Scott},
title = {shmlast: An improved implementation of Conditional Reciprocal Best Hits with LAST and Python},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {142},
doi = {10.21105/joss.00142},
url = {https://joss.theoj.org/papers/joss.00142/10.21105/joss.00142},
}
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author = {Nicolas CARPi and Alexander Minges and Matthieu Piel},
title = {eLabFTW: An open source laboratory notebook for research labs},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {146},
doi = {10.21105/joss.00146},
url = {https://joss.theoj.org/papers/joss.00146/10.21105/joss.00146},
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author = {Antti Kamppi and Esko Pekkarinen and Janne Virtanen and Joni-Matti Määttä and Juho Järvinen and Lauri Matilainen and Mikko Teuho and Timo D. Hämäläinen},
title = {Kactus2: A graphical EDA tool built on the IP-XACT standard},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {151},
doi = {10.21105/joss.00151},
url = {https://joss.theoj.org/papers/joss.00151/10.21105/joss.00151},
}
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author = {Matthew M McCormick and Mark L Palmeri and Jean-Christophe Fillion-Robin and Stephen Aylward},
title = {SlicerITKUltrasound: A 3D Slicer extension for scan conversion of B-mode and next-generation ultrasound imaging modalities},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {153},
doi = {10.21105/joss.00153},
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author = {Devarshi Ghoshal and Valerie Hendrix and William Fox and Sowmya Balasubhramanian and Lavanya Ramakrishnan},
title = {FRIEDA: Flexible Robust Intelligent Elastic Data Management Framework},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {164},
doi = {10.21105/joss.00164},
url = {https://joss.theoj.org/papers/joss.00164/10.21105/joss.00164},
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author = {Benny Malengier and Pavol Kišon and James Tocknell and Claas Abert and Florian Bruckner and Marc-Antonio Bisotti},
title = {ODES: a high level interface to ODE and DAE solvers},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2018},
volume = {3},
number = {},
pages = {165},
doi = {10.21105/joss.00165},
url = {https://joss.theoj.org/papers/joss.00165/10.21105/joss.00165},
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author = {Pranay Seshadri and Geoffrey Parks},
title = {Effective-Quadratures (EQ): Polynomials for Computational Engineering Studies},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {166},
doi = {10.21105/joss.00166},
url = {https://joss.theoj.org/papers/joss.00166/10.21105/joss.00166},
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author = {R Daniel Kortschak and Josh Bleecher Snyder and Manolis Maragkakis and David L Adelson},
title = {bíogo: a simple high-performance bioinformatics toolkit for the Go language},
journal = {Journal of Open Source Software},
ISSN = {2475-9066},
year = {2017},
volume = {2},
number = {},
pages = {167},
doi = {10.21105/joss.00167},
url = {https://joss.theoj.org/papers/joss.00167/10.21105/joss.00167},
}