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Commit 05fe9dc

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Alexandre Souvorov
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Update of NGS library
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Makefile

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Original file line numberDiff line numberDiff line change
@@ -108,11 +108,13 @@ kmercounter: kmercounter.o glb_align.o
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$(NGS_DIR)/ngs.done:
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rm -fr $(NGS_DIR)
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mkdir -p $(NGS_DIR)/ngs
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mkdir $(BUILD_PATH)
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mkdir $(NGS_PATH)
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mkdir $(VDB_PATH)
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mkdir $(BUILD_PATH)
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mkdir $(NGS_PATH)
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mkdir $(VDB_PATH)
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cd $(NGS_DIR)/ngs; git init; git remote add -f origin https://github.com/ncbi/ngs.git; git config core.sparseCheckout true; echo "ngs-sdk" >> .git/info/sparse-checkout; git pull origin master
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cd $(NGS_DIR)/ngs/ngs-sdk; ./configure --prefix=$(NGS_PATH) --build-prefix=$(BUILD_PATH); make; make install
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cd $(NGS_DIR); git clone https://github.com/ncbi/ncbi-vdb.git
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cd $(NGS_DIR)/ncbi-vdb; ./configure --prefix=$(VDB_PATH) --build-prefix=$(BUILD_PATH); make; make install
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cd $(NGS_DIR); git clone https://github.com/ncbi/sra-tools.git
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cd $(NGS_DIR)/sra-tools; ./configure --prefix=$(VDB_PATH) --build-prefix=$(BUILD_PATH); make; make install
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touch $@

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