Commit 05fe9dc Alexandre Souvorov
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lines changed Original file line number Diff line number Diff line change @@ -108,11 +108,13 @@ kmercounter: kmercounter.o glb_align.o
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$(NGS_DIR ) /ngs.done :
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rm -fr $(NGS_DIR )
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mkdir -p $(NGS_DIR ) /ngs
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- mkdir $(BUILD_PATH )
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- mkdir $(NGS_PATH )
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- mkdir $(VDB_PATH )
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+ mkdir $(BUILD_PATH )
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+ mkdir $(NGS_PATH )
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+ mkdir $(VDB_PATH )
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cd $(NGS_DIR ) /ngs; git init; git remote add -f origin https://github.com/ncbi/ngs.git; git config core.sparseCheckout true ; echo " ngs-sdk" >> .git/info/sparse-checkout; git pull origin master
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cd $(NGS_DIR ) /ngs/ngs-sdk; ./configure --prefix=$(NGS_PATH ) --build-prefix=$(BUILD_PATH ) ; make; make install
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cd $(NGS_DIR ) ; git clone https://github.com/ncbi/ncbi-vdb.git
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cd $(NGS_DIR ) /ncbi-vdb; ./configure --prefix=$(VDB_PATH ) --build-prefix=$(BUILD_PATH ) ; make; make install
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+ cd $(NGS_DIR ) ; git clone https://github.com/ncbi/sra-tools.git
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+ cd $(NGS_DIR ) /sra-tools; ./configure --prefix=$(VDB_PATH ) --build-prefix=$(BUILD_PATH ) ; make; make install
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touch $@
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