mlr_predict_variant_composition/environment.yml at main · neherlab/mlr_predict_variant_composition · GitHub

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name: neherlab
channels:
  - anaconda
  - plotly
  - bioconda
  - r
  - defaults
  - conda-forge
dependencies:
  - appnope=0.1.4=pyhd8ed1ab_1
  - asttokens=3.0.0=pyhd8ed1ab_1
  - attrs=25.3.0=pyh71513ae_0
  - brotli=1.1.0=hd74edd7_2
  - brotli-bin=1.1.0=hd74edd7_2
  - brotli-python=1.1.0=py311h3f08180_2
  - bzip2=1.0.8=h99b78c6_7
  - ca-certificates=2025.4.26=hbd8a1cb_0
  - certifi=2025.4.26=pyhd8ed1ab_0
  - cffi=1.17.1=py311h3a79f62_0
  - charset-normalizer=3.4.1=pyhd8ed1ab_0
  - clarabel=0.10.0=py311h1ac24e5_0
  - comm=0.2.2=pyhd8ed1ab_1
  - contourpy=1.3.1=py311h210dab8_0
  - cvxpy=1.5.3=py311ha1ab1f8_0
  - cvxpy-base=1.5.3=py311h4b4568b_0
  - cycler=0.12.1=pyhd8ed1ab_1
  - debugpy=1.8.13=py311h155a34a_0
  - decorator=5.2.1=pyhd8ed1ab_0
  - ecos=2.0.14=py311h0f07fe1_1
  - exceptiongroup=1.2.2=pyhd8ed1ab_1
  - executing=2.1.0=pyhd8ed1ab_1
  - fonttools=4.56.0=py311h4921393_0
  - freetype=2.13.3=h1d14073_0
  - h2=4.2.0=pyhd8ed1ab_0
  - hpack=4.1.0=pyhd8ed1ab_0
  - hyperframe=6.1.0=pyhd8ed1ab_0
  - idna=3.10=pyhd8ed1ab_1
  - importlib-metadata=8.6.1=pyha770c72_0
  - importlib_resources=6.5.2=pyhd8ed1ab_0
  - ipykernel=6.29.5=pyh57ce528_0
  - ipython=9.0.2=pyhfb0248b_0
  - ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0
  - jedi=0.19.2=pyhd8ed1ab_1
  - jsonschema=4.23.0=pyhd8ed1ab_1
  - jsonschema-specifications=2024.10.1=pyhd8ed1ab_1
  - jupyter_client=8.6.3=pyhd8ed1ab_1
  - jupyter_core=5.7.2=pyh31011fe_1
  - krb5=1.21.3=h237132a_0
  - lcms2=2.17=h7eeda09_0
  - lerc=4.0.0=h9a09cb3_0
  - libblas=3.9.0=31_h10e41b3_openblas
  - libbrotlicommon=1.1.0=hd74edd7_2
  - libbrotlidec=1.1.0=hd74edd7_2
  - libbrotlienc=1.1.0=hd74edd7_2
  - libcblas=3.9.0=31_hb3479ef_openblas
  - libcxx=20.1.1=ha82da77_0
  - libdeflate=1.23=hec38601_0
  - libedit=3.1.20250104=pl5321hafb1f1b_0
  - libexpat=2.7.0=h286801f_0
  - libffi=3.4.6=h1da3d7d_1
  - libgfortran=5.0.0=14_2_0_h6c33f7e_1
  - libgfortran5=14.2.0=h6c33f7e_1
  - libjpeg-turbo=3.0.0=hb547adb_1
  - liblapack=3.9.0=31_hc9a63f6_openblas
  - liblzma=5.6.4=h39f12f2_0
  - libopenblas=0.3.29=openmp_hf332438_0
  - libosqp=0.6.3=h5833ebf_1
  - libpng=1.6.47=h3783ad8_0
  - libqdldl=0.1.7=hb7217d7_0
  - libsodium=1.0.20=h99b78c6_0
  - libsqlite=3.49.1=h3f77e49_2
  - libtiff=4.7.0=h551f018_3
  - libwebp-base=1.5.0=h2471fea_0
  - libxcb=1.17.0=hdb1d25a_0
  - libzlib=1.3.1=h8359307_2
  - llvm-openmp=20.1.1=hdb05f8b_1
  - matplotlib=3.10.1=py311ha1ab1f8_0
  - matplotlib-base=3.10.1=py311h031da69_0
  - matplotlib-inline=0.1.7=pyhd8ed1ab_1
  - munkres=1.1.4=pyh9f0ad1d_0
  - narwhals=1.35.0=pyh29332c3_0
  - nbformat=5.10.4=pyhd8ed1ab_1
  - ncurses=6.5=h5e97a16_3
  - nest-asyncio=1.6.0=pyhd8ed1ab_1
  - openjpeg=2.5.3=h8a3d83b_0
  - openssl=3.5.0=h81ee809_1
  - osqp=0.6.7.post3=py311h3228b58_1
  - packaging=24.2=pyhd8ed1ab_2
  - parso=0.8.4=pyhd8ed1ab_1
  - patsy=1.0.1=pyhd8ed1ab_1
  - pexpect=4.9.0=pyhd8ed1ab_1
  - pickleshare=0.7.5=pyhd8ed1ab_1004
  - pillow=11.1.0=py311hb9ba9e9_0
  - pip=25.0.1=pyh8b19718_0
  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_2
  - platformdirs=4.3.7=pyh29332c3_0
  - plotly=6.0.0=py_0
  - prompt-toolkit=3.0.50=pyha770c72_0
  - psutil=7.0.0=py311h917b07b_0
  - pthread-stubs=0.4=hd74edd7_1002
  - ptyprocess=0.7.0=pyhd8ed1ab_1
  - pure_eval=0.2.3=pyhd8ed1ab_1
  - pycparser=2.22=pyh29332c3_1
  - pygments=2.19.1=pyhd8ed1ab_0
  - pyparsing=3.2.3=pyhd8ed1ab_1
  - pysocks=1.7.1=pyha55dd90_7
  - python=3.11.11=hc22306f_2_cpython
  - python-dateutil=2.9.0.post0=pyhff2d567_1
  - python-fastjsonschema=2.21.1=pyhd8ed1ab_0
  - python-tzdata=2025.2=pyhd8ed1ab_0
  - python_abi=3.11=6_cp311
  - pyzmq=26.3.0=py311h01f2145_0
  - qdldl-python=0.1.7.post5=np20py311h7e49079_1
  - qhull=2020.2=h420ef59_5
  - readline=8.2=h1d1bf99_2
  - referencing=0.36.2=pyh29332c3_0
  - requests=2.32.3=py311hca03da5_1
  - rpds-py=0.24.0=py311hc9d6b66_0
  - scipy=1.15.2=py311h0675101_0
  - scs=3.2.7.post2=default_py311h26e618d_0
  - seaborn=0.13.2=hd8ed1ab_3
  - seaborn-base=0.13.2=pyhd8ed1ab_3
  - setuptools=75.8.2=pyhff2d567_0
  - six=1.17.0=pyhd8ed1ab_0
  - stack_data=0.6.3=pyhd8ed1ab_1
  - statsmodels=0.14.4=py311h0f07fe1_0
  - tk=8.6.13=h5083fa2_1
  - tornado=6.4.2=py311h917b07b_0
  - traitlets=5.14.3=pyhd8ed1ab_1
  - typing_extensions=4.13.0=pyh29332c3_1
  - tzdata=2025b=h78e105d_0
  - unicodedata2=16.0.0=py311h917b07b_0
  - urllib3=2.4.0=pyhd8ed1ab_0
  - wcwidth=0.2.13=pyhd8ed1ab_1
  - wheel=0.45.1=pyhd8ed1ab_1
  - xorg-libxau=1.0.12=h5505292_0
  - xorg-libxdmcp=1.1.5=hd74edd7_0
  - zeromq=4.3.5=hc1bb282_7
  - zipp=3.21.0=pyhd8ed1ab_1
  - zstandard=0.23.0=py311h917b07b_1
  - zstd=1.5.7=h6491c7d_2
  - pip:
      - blackjax==0.9.6
      - evofr==0.1.26
      - fastprogress==1.0.3
      - jax==0.4.38
      - jaxlib==0.4.38
      - jaxopt==0.8.3
      - kiwisolver==1.4.8
      - ml-dtypes==0.5.1
      - multipledispatch==1.0.0
      - numpy==1.26.4
      - numpyro==0.13.2
      - opt-einsum==3.4.0
      - pandas==1.5.3
      - pytz==2025.2
      - tqdm==4.67.1
prefix: /opt/homebrew/Caskroom/miniforge/base/envs/neherlab