GFAv1 output

[ekg]

Is it possible to obtain the paths as directed walks through the graph in GFAv1 format?

[nnoll]

It is not currently a feature within the code, as we only implement GFAv1 and not GFAv1.1, however I think this would be easy to add in practice. My only hangup on exposing paths as a directed walk is there is always the reverse-complementation symmetry which means the path taken in reverse (with all pancontigs traversed in the opposite orientation) is also valid.

I will assign this to myself and add the feature time permitting.

[ekg]

I would suggest GFAv1. v1.1 adds a second path type for metadata on paths that seems relevant haplotype panels. This breaks most existing tools for no general benefit.

…

On Thu, Feb 24, 2022, 18:28 Nicholas Noll ***@***.***> wrote: It is not currently a feature within the code, as we only implement GFAv1 and not GFAv1.1, however I think this would be easy to add in practice. My only hangup on exposing paths as a directed walk is there is always the reverse-complementation symmetry which means the path taken in reverse (with all pancontigs traversed in the opposite orientation) is also valid. I will assign this to myself and add the feature time permitting. — Reply to this email directly, view it on GitHub <#17 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AABDQEKXGTWZAT47RE7JR53U4ZTDNANCNFSM5PH7DZJQ> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. You are receiving this because you authored the thread.Message ID: ***@***.***>