Update supported Python versions to 3.11 - 3.13 (#120)

* update supported Python version to 3.11 - 3.13

* Use default python version for docs build

* Bring back Python version for build docs action

---------

Co-authored-by: sfmig <[email protected]>

Author: niksirbi

.github/workflows/docs_build_and_deploy.yml

@@ -37,11 +37,12 @@ jobs:
     steps:
       - uses: neuroinformatics-unit/actions/build_sphinx_docs@main
         with:
-          python-version: 3.12
+          python-version: 3.13 # default for the action is 3.x
           use-make: true
           fetch-tags: true
           use-artifactci: lazy
 
+
   deploy_sphinx_docs:
     name: Deploy Sphinx Docs
     needs: build_sphinx_docs

.github/workflows/test_and_deploy.yml

@@ -32,14 +32,14 @@ jobs:
     strategy:
       matrix:
         # Run all supported Python versions on linux
-        python-version: ["3.10", "3.11", "3.12"]
+        python-version: ["3.11", "3.12", "3.13"]
         os: [ubuntu-latest]
         # Include one windows and macos run
         include:
         - os: macos-latest
-          python-version: "3.11"
+          python-version: "3.13"
         - os: windows-latest
-          python-version: "3.11"
+          python-version: "3.13"
 
     steps:
       # Run tests

.pre-commit-config.yaml

@@ -55,6 +55,3 @@ repos:
     rev: v2.4.1
     hooks:
     - id: codespell
-      additional_dependencies:
-      # tomli dependency can be removed when we drop support for Python 3.10
-      - tomli

CONTRIBUTING.md

@@ -11,7 +11,7 @@ development environment. In the following, we assume you have
 To install `ethology` for development, first create and activate a `conda` environment:
 
 ```sh
-conda create -n ethology-dev python=3.12
+conda create -n ethology-dev python=3.13
 conda activate ethology-dev
 ```
 

README.md

@@ -15,7 +15,7 @@ Mix-and-match computer vision tools for your animal behaviour analysis.
 
 Create a conda environment and install the package
 ```sh
-conda create -n ethology-env python=3.12 -y
+conda create -n ethology-env python=3.13 -y
 conda activate ethology-env
 pip install ethology
 ```

docs/source/environment.yml

@@ -3,7 +3,7 @@
 channels:
   - conda-forge
 dependencies:
-  - python=3.12
+  - python=3.13
   - pytables
   # - pip:
   #   - ethology

docs/source/installation.md

@@ -21,7 +21,7 @@ git clone https://github.com/neuroinformatics-unit/ethology.git
 
 Then create a conda environment and install the package from source
 ```sh
-conda create -n ethology-env python=3.12 -y
+conda create -n ethology-env python=3.13 -y
 conda activate ethology-env
 cd ethology
 pip install .

pyproject.toml

@@ -3,7 +3,7 @@ name = "ethology"
 authors = [{ name = "Adam Tyson", email = "[email protected]" }]
 description = "Data processing tools for animal behavioural analysis"
 readme = "README.md"
-requires-python = ">=3.10.0"
+requires-python = ">=3.11.0"
 dynamic = ["version"]
 
 license = { text = "BSD-3-Clause" }
@@ -12,9 +12,9 @@ classifiers = [
   "Development Status :: 2 - Pre-Alpha",
   "Programming Language :: Python",
   "Programming Language :: Python :: 3",
-  "Programming Language :: Python :: 3.10",
   "Programming Language :: Python :: 3.11",
   "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: 3.13",
   "Operating System :: OS Independent",
   "License :: OSI Approved :: BSD License",
 ]
@@ -127,14 +127,14 @@ check-hidden = true
 [tool.tox]
 legacy_tox_ini = """
 [tox]
-envlist = py{310,311,312}
+envlist = py{311,312,313}
 isolated_build = True
 
 [gh-actions]
 python =
-    3.10: py310
     3.11: py311
     3.12: py312
+    3.13: py313
 
 [testenv]
 extras =