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Designate 6 new clades (#1192)
# Conflicts: # defaults/clades.tsv
1 parent 2b77bd3 commit 8491d65

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defaults/clade_display_names.yml

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@@ -50,3 +50,9 @@
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25A: 25A (LP.8.1)
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25B: 25B (NB.1.8.1)
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25C: 25C (XFG)
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25D: 25D (MC.10.2.1)
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25E: 25E (PY.1)
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25F: 25F (NW.1.2)
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25G: 25G (XFC)
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25H: 25H (XFJ)
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25I: 25I (BA.3.2)

defaults/clade_emergence_dates.tsv

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@@ -52,3 +52,9 @@ Nextstrain_clade first_sequence
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25A 2024-07-01
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25B 2025-01-01
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25C 2025-01-01
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25D 2024-08-01
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25E 2024-12-01
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25F 2025-01-01
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25G 2025-11-01
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25H 2025-12-01
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25I 2024-06-01

defaults/clade_hierarchy.tsv

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@@ -50,3 +50,9 @@ clade parent WHO
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25A 24B Omicron
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25B 24D Omicron
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25C 24A Omicron
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25D 24E Omicron
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25E 24H Omicron
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25F 25A Omicron
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25G 24A Omicron
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25H 24A Omicron
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25I 21M Omicron

defaults/clades.tsv

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@@ -283,3 +283,28 @@ clade gene site alt
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25C clade 24A
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25C nuc 4214 C
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25C nuc 8350 C
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25D clade 24E
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25D nuc 6454 T
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25D nuc 16041 T
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25E clade 24H
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25E nuc 10978 T
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25E nuc 25523 A
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25F clade 25A
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25F nuc 4723 C
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25F nuc 11941 T
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25G clade 24A
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25G nuc 12892 A
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25G nuc 23598 G
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25G nuc 25925 T
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25H clade 24A
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25H nuc 25844 T
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25H nuc 27414 A
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25I clade 21M
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25I nuc 12095 C
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25I nuc 25114 A

defaults/color_ordering.tsv

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@@ -34050,6 +34050,12 @@ clade_membership 24I (MV.1)
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clade_membership 25A (LP.8.1)
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clade_membership 25B (NB.1.8.1)
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clade_membership 25C (XFG)
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clade_membership 25D (MC.10.2.1)
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clade_membership 25E (PY.1)
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clade_membership 25F (NW.1.2)
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clade_membership 25G (XFC)
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clade_membership 25H (XFJ)
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clade_membership 25I (BA.3.2)
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